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1. EigenStratDatabaseTools EigenStratDatabaseTools Public

   A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.

   Python 6

2. Sex.DetERRmine Sex.DetERRmine Public

   A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.

   Python 17 7

3. RAStools RAStools Public

   A set of tools to calculate Rare Allele Sharing statistics.

   Python 5 1

4. BareBonesBash BareBonesBash Public

   A basic Bash tutorial by @jfy133, @aidaanva and @TCLamnidis.

   HTML 2

5. AdmixturePlotter AdmixturePlotter Public

   An R script to generate plots for ADMIXTURE runs, for multiple K values.

   R 19 3

6. ContaminateGenotypes ContaminateGenotypes Public

   A simple python script to contaminate Eigenstrat genotypes.

   Python 2 1