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Name		Name	Last commit message	Last commit date
AP3		AP3
AP4		AP4
AP5		AP5
AP8		AP8
CRF		CRF
DATA		DATA
Pflichtenheft		Pflichtenheft
hypes		hypes
model		model
svm		svm
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
analyze.py		analyze.py
config.py		config.py
eval.py		eval.py
normalize_labels.py		normalize_labels.py
requirements.txt		requirements.txt
seg_utils.py		seg_utils.py
utils.py		utils.py

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MediSeg

Models for Medical Segmentation

Setup

[Optional] configure DATA folder in "config.py"
Download "Segmentation_Rigid_Training.zip" at http://grand-challenge.org/site/EndoVisSub-Instrument/
Copy "Segmentation_Rigid_Training.zip" into the DATA folder and run python DATA/create_filelist.py -d DATA and python DATA/create_filelist.py -d DATA --txt.

Usage

Install TensorVision

$ tv-train --hypes hypes/medseg.json

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Models for Medical Segmentation

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