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1. flybody flybody Public

   MuJoCo fruit fly body model and locomotion RL tasks

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2. flyvis flyvis Public

   A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.

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3. DECODE DECODE Public

   This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

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4. wormvae wormvae Public

   Connectome-constrained Latent Variable Model of Whole-brain Neural Activity, ICLR 2022

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5. malis malis Public

   MALIS structured loss function for supervised learning of segmentation and clustering

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6. snapshotscope snapshotscope Public

   Differentiable 4f microscope/phase mask simulation

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