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  1. GenoFLU GenoFLU Public

    Influenza data pipeline to automate genotyping assignment

    Python 45 11

  2. vSNP vSNP Public archive

    vSNP -- validate SNPs

    Python 22 12

  3. vSNP3 vSNP3 Public

    vSNP -- validate SNPs

    Python 14 3

  4. nvsl_bioinformatic_training nvsl_bioinformatic_training Public

    The NVSL Bioinformatics Workshop will feature training on command-line bioinformatic tools, processes, and resources routinely used at NVSL for diagnostic testing.

    HTML 1 1

  5. Flumina Flumina Public

    Forked from flu-crew/Flumina

    A pipeline for the analysis of Illumina sequence data from Influenza viruses

    R 1 1

  6. phylogenetic-tree-html-viewer phylogenetic-tree-html-viewer Public

    View, reroot, color and share phylogenetic trees in your browser, with branch lengths as SNP counts. Nothing to install, and your data never leaves your computer.

    HTML 1

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Showing 10 of 12 repositories
  • vSNP3 Public

    vSNP -- validate SNPs

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    USDA-VS/vSNP3's past year of commit activity
    Python 14 GPL-3.0 3 3 1 Updated Oct 28, 2026
  • phylogenetic-tree-html-viewer Public

    View, reroot, color and share phylogenetic trees in your browser, with branch lengths as SNP counts. Nothing to install, and your data never leaves your computer.

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    There was an error while loading. Please reload this page.

    USDA-VS/phylogenetic-tree-html-viewer's past year of commit activity
    HTML 1 0 0 0 Updated Sep 25, 2026
  • GenoFLU Public

    Influenza data pipeline to automate genotyping assignment

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    USDA-VS/GenoFLU's past year of commit activity
    Python 45 GPL-3.0 11 2 0 Updated Sep 10, 2026
  • nvsl_bioinformatic_training Public

    The NVSL Bioinformatics Workshop will feature training on command-line bioinformatic tools, processes, and resources routinely used at NVSL for diagnostic testing.

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    USDA-VS/nvsl_bioinformatic_training's past year of commit activity
    HTML 1 1 0 0 Updated Jul 21, 2026
  • vSNP Public archive

    vSNP -- validate SNPs

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    USDA-VS/vSNP's past year of commit activity
    Python 22 GPL-3.0 12 4 0 Updated Jun 24, 2026
  • Flumina Public Forked from flu-crew/Flumina

    A pipeline for the analysis of Illumina sequence data from Influenza viruses

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    USDA-VS/Flumina's past year of commit activity
    R 1 GPL-3.0 2 0 0 Updated Apr 21, 2026
  • vsnp3_test_dataset Public

    Dataset for testing vSNP version 3 installation

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    USDA-VS/vsnp3_test_dataset's past year of commit activity
    0 1 0 0 Updated Feb 9, 2026
  • vSNP_reference_options Public

    vSNP supporting files

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    USDA-VS/vSNP_reference_options's past year of commit activity
    0 GPL-3.0 2 0 0 Updated Sep 21, 2021
  • minimum_fastqs Public

    testing files: smallest file size and still complete through vSNP_step1.py

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    USDA-VS/minimum_fastqs's past year of commit activity
    0 1 0 0 Updated Jan 7, 2020
  • vcf_test_files Public

    A small set of VCFs with expected output tables for script testing

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    USDA-VS/vcf_test_files's past year of commit activity
    0 1 0 0 Updated Jan 28, 2019
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