GeezerVison is showing github.com — VEuPathDB Bioinformatics Resource Center
The Eukaryotic Pathogen, Vector & Host Informatics Resource — a Bioinformatics Resource Center providing
integrated genomic, functional, and population data for eukaryotic pathogens, invertebrate vectors of disease,
and their hosts.
🌐 veupathdb.org
Websites and services — the WDK-based websites, web services, and data APIs behind the resources aboveData loading workflows — *-nextflow repositories implement the analysis pipelines used to build each releaseShared tooling — reusable CI workflows live in VEuPathDB/.github
Issues and pull requests are welcome on individual repositories.
Popular repositories
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run kneaddata+humann for a list of samples using nextflow
Python
5
1
A monorepo that contains all frontend code for VEuPathDB websites
TypeScript
3
Forked from sciurus/gente
A web application for self-service LDAP password changes
Perl
2
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Showing 10 of 344 repositories
VEuPathDB/pathfinder-app's past year of commit activity
Python
0
Apache-2.0
0
18
0
Updated Nov 12, 2026
VEuPathDB/ApiCommonModel's past year of commit activity
Perl
1
Apache-2.0
1
8
17
Updated Nov 12, 2026
ngs-samples-nextflow
Public
Fetch ngs samples from SRA if needed and/or prepare samplesheet for further processing
VEuPathDB/ngs-samples-nextflow's past year of commit activity
Nextflow
0
Apache-2.0
0
0
0
Updated Nov 12, 2026
VEuPathDB/bulk-rnaseq-nextflow's past year of commit activity
Nextflow
0
MIT
1
1
0
Updated Nov 12, 2026
dnaseq-nextflow
Public
DNASeq Alignments with SNP and CNV nextflow workflow
VEuPathDB/dnaseq-nextflow's past year of commit activity
Julia
1
Apache-2.0
1
5
1
Updated Nov 12, 2026
dataset-curator
Public
This repository contains tools and standard operating procedures (SOPs) for processing new datasets for VEuPathDB resources.
VEuPathDB/dataset-curator's past year of commit activity
JavaScript
1
0
1
4
Updated Nov 12, 2026
VEuPathDB/ai-wdk-mcp's past year of commit activity
Python
0
0
0
0
Updated Nov 12, 2026
VEuPathDB/ai-veupathdb-client's past year of commit activity
Python
0
0
0
0
Updated Nov 12, 2026
web-monorepo
Public
A monorepo that contains all frontend code for VEuPathDB websites
VEuPathDB/web-monorepo's past year of commit activity
TypeScript
3
Apache-2.0
0
290
36
Updated Nov 12, 2026
VEuPathDB/lib-perl-dbi-utils's past year of commit activity
Perl
0
Apache-2.0
0
0
0
Updated Nov 12, 2026
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