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MycoCosm_genome_downloader MycoCosm_genome_downloader Public

Tool to download fungal genomes (fasta + gff) files from JGI's MycoCosm

Python 7 2
FNP_aux_scripts FNP_aux_scripts Public

Small scripts to help with fungal biosynthetic gene cluster mining

Python 6 3
ArboPhyl ArboPhyl Public

BUSCO based phylogenetics pipeline

Python 6
BUSCO-fungal-phylogenomics BUSCO-fungal-phylogenomics Public

Scripts to make a phylogenomic analysis using BUSCO

Python 2
TeloVision TeloVision Public

Determine presence of telomeres and visualise genome assembly scaffolds.

Python 2
SNPanalysis SNPanalysis Public

Forked from vuthuyduong/SNPanalysis

This pipeline is to generate a VCF file for a set of genomes, compared with a reference genome, developed by Duong Vu.

Python 1

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Showing 10 of 13 repositories

iTOL_Label_Generator Public

WesterdijkInstitute/iTOL_Label_Generator's past year of commit activity

R 1 0 0 0 Updated Jun 8, 2026
MycoCosm-Loci-Extractor Public
Uses protein labels to extract a loci from MycoCosm genome projects

WesterdijkInstitute/MycoCosm-Loci-Extractor's past year of commit activity

Python 0 MIT 0 0 0 Updated Mar 19, 2026
MycoCosm_genome_downloader Public
Tool to download fungal genomes (fasta + gff) files from JGI's MycoCosm

WesterdijkInstitute/MycoCosm_genome_downloader's past year of commit activity

Python 7 AGPL-3.0 2 1 0 Updated Aug 21, 2025
BUSCO-fungal-phylogenomics Public
Scripts to make a phylogenomic analysis using BUSCO

WesterdijkInstitute/BUSCO-fungal-phylogenomics's past year of commit activity

Python 2 0 1 0 Updated Oct 6, 2024
HighGene Public
Highlight gene content variations

WesterdijkInstitute/HighGene's past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Sep 19, 2024
dAImos Public
A deep learning approach for the identification of microsatellites in genome assemblies

WesterdijkInstitute/dAImos's past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Jul 10, 2024
TeloVision Public
Determine presence of telomeres and visualise genome assembly scaffolds.

WesterdijkInstitute/TeloVision's past year of commit activity

Python 2 GPL-3.0 0 0 0 Updated Apr 19, 2024
ArboPhyl Public
BUSCO based phylogenetics pipeline

WesterdijkInstitute/ArboPhyl's past year of commit activity

Python 6 MIT 0 0 0 Updated Mar 22, 2024
dnabarcoder Public Forked from vuthuyduong/dnabarcoder
dnabarcoder: a tool for eDNA identification

WesterdijkInstitute/dnabarcoder's past year of commit activity

Python 1 Apache-2.0 6 0 0 Updated Jan 29, 2024
SNPanalysis Public Forked from vuthuyduong/SNPanalysis
This pipeline is to generate a VCF file for a set of genomes, compared with a reference genome, developed by Duong Vu.

WesterdijkInstitute/SNPanalysis's past year of commit activity

Python 1 Apache-2.0 2 0 0 Updated Aug 15, 2023

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