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rite_weight rite_weight Public

A lightweight Python package for computing steady-state weights from short trajectory segments.

Python 7 1
BayesianBootstrap BayesianBootstrap Public

Python 5 2
pyGridSampler pyGridSampler Public

An adaptive grid-based sampling method using iterative batch sizes

Jupyter Notebook 5 3
NMpathAnalysis NMpathAnalysis Public

Jupyter Notebook 3 4
WE_variance_minimization WE_variance_minimization Public

Python 2 1
msm_we msm_we Public

This is a package for doing history-augmented MSM (haMSM) analysis on weighted ensemble trajectories.

Python 2 1

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rite_weight Public
A lightweight Python package for computing steady-state weights from short trajectory segments.

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ZuckermanLab/rite_weight's past year of commit activity

Python 7 MIT 1 0 0 Updated Oct 29, 2026
CodingClass2026 Public

ZuckermanLab/CodingClass2026's past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jul 28, 2026
WE_variance_minimization Public

ZuckermanLab/WE_variance_minimization's past year of commit activity

Python 2 1 0 0 Updated Mar 4, 2026
CodingClass2025 Public
Materials for summer 2025 class for high-school students

ZuckermanLab/CodingClass2025's past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jul 25, 2025
Bayesian_hierarchical_ITC Public

ZuckermanLab/Bayesian_hierarchical_ITC's past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jul 8, 2025
CellTrajAnl Public
Analysis of cell state transition dynamics from the brightfield microscopy images of MCF10A cells treated with ligands EGF, OSM, TGF-beta, and their combinations.

ZuckermanLab/CellTrajAnl's past year of commit activity

1 GPL-3.0 0 0 0 Updated Jan 19, 2025
msm_we Public
This is a package for doing history-augmented MSM (haMSM) analysis on weighted ensemble trajectories.

ZuckermanLab/msm_we's past year of commit activity

Python 2 MIT 1 1 0 Updated Nov 19, 2024
celltraj Public Forked from jcopperm/celltraj
Live-cell imaging cell-state trajectory embedding

ZuckermanLab/celltraj's past year of commit activity

Python 0 MIT 2 0 0 Updated Nov 2, 2024
coding2024 Public
Materials for introductory coding class - Summer 2024

ZuckermanLab/coding2024's past year of commit activity

Jupyter Notebook 0 3 0 0 Updated Jul 26, 2024
ModelExplorer Public

ZuckermanLab/ModelExplorer's past year of commit activity

Perl 0 GPL-3.0 0 0 0 Updated Feb 17, 2024

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