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Compacted and colored de Bruijn graph construction and querying
Rust
101
17
Space-efficient pseudoalignment with a colored de Bruijn graph
C++
59
5
An accurate aligner of long reads to a variation graph, based on co-linear chaining
C++
35
4
Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
C++
25
6
Minimum plain text representation of kmer sets
Rust
20
5
EMERALD calculates safety-windows by exploring the suboptimal alignment space
C++
19
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Showing 10 of 50 repositories
tsalign
Public
A sequence-to-sequence aligner that accounts for template switches
algbio/tsalign's past year of commit activity
Rust
2
1
23
0
Updated Nov 12, 2026
BubbleFinder
Public
Find and decompose genomic variation sites in pangenome graphs
algbio/BubbleFinder's past year of commit activity
C++
17
GPL-3.0
1
0
1
Updated Nov 9, 2026
algbio/BubbleFinder-experiments's past year of commit activity
Python
0
1
0
0
Updated Nov 9, 2026
ggcat
Public
Compacted and colored de Bruijn graph construction and querying
algbio/ggcat's past year of commit activity
Rust
101
MIT
17
8
2
Updated Nov 3, 2026
emerald-ui
Public
Interactive Protein Sequence Alignment Visualization
algbio/emerald-ui's past year of commit activity
TypeScript
6
MIT
2
0
1
Updated Nov 2, 2026
spl-IsoQuant
Public
A pipeline for processing single-cell and spatial long-read transcriptomic data
algbio/spl-IsoQuant's past year of commit activity
Python
13
1
7
0
Updated Oct 28, 2026
eds
Public
Constructing EDSes from MSAs
algbio/eds's past year of commit activity
C++
0
GPL-2.0
1
0
1
Updated Sep 23, 2026
algbio/spqr-rust's past year of commit activity
Rust
5
1
0
0
Updated Aug 17, 2026
algbio/bioconda-recipes's past year of commit activity
Shell
0
MIT
4,246
0
0
Updated Jul 1, 2026
flowpaths
Public
A Python package to quickly decompose weighted graphs (acyclic or not) into weighted paths or walks, under various models.
algbio/flowpaths's past year of commit activity
Python
14
MIT
6
0
1
Updated Jun 30, 2026