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compositional data analysis toolbox
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Showing 10 of 92 repositories
micov
Public
Aggregate genome coverage
biocore/micov's past year of commit activity
Python
13
7
12
0
Updated Oct 22, 2026
kl-metapool
Public
Jupyter notebooks to assist with sample processing
biocore/kl-metapool's past year of commit activity
biom-format
Public
The Biological Observation Matrix (BIOM) Format Project
biocore/biom-format's past year of commit activity
Python
97
94
23
4
Updated Oct 12, 2026
pysyndna
Public
Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022
biocore/pysyndna's past year of commit activity
Python
0
0
0
0
Updated Sep 20, 2026
biocore/q2-birdman's past year of commit activity
Python
3
BSD-3-Clause
4
0
0
Updated Sep 16, 2026
biocore/unifrac-binaries's past year of commit activity
C++
2
BSD-3-Clause
10
5
1
Updated Sep 6, 2026
q2-conduit
Public
Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts for downstream analyses
biocore/q2-conduit's past year of commit activity
Python
0
BSD-3-Clause
1
0
0
Updated Aug 27, 2026
tax2tree
Public
Automated taxonomy decoration onto a tree
biocore/tax2tree's past year of commit activity
Python
19
BSD-3-Clause
11
10
2
Updated Jul 16, 2026
gemelli
Public
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
biocore/gemelli's past year of commit activity
BIRDMAn
Public
Bayesian Inferential Regression for Differential Microbiome Analysis
biocore/BIRDMAn's past year of commit activity
Python
26
BSD-3-Clause
6
18
1
Updated Jun 5, 2026