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nextflu nextflu Public

Real-time tracking of influenza evolution

JavaScript 91 18
blotter blotter Public

bedford lab research

HTML 68 93
global-migration global-migration Public

Analysis of global migration patterns of seasonal influenza viruses

Mathematica 23
baltic baltic Public

Forked from evogytis/baltic

baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

Jupyter Notebook 12 6
siv-cst siv-cst Public

Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

Jupyter Notebook 6 2
zika-seq zika-seq Public

Pipelines to do MinION sequencing of Zika virus

Python 15 3

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Showing 10 of 116 repositories

ncov-usa-mig Public
SARS-CoV-2 geographic and demographic structure in the USA

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blab/ncov-usa-mig's past year of commit activity

HTML 1 0 0 0 Updated Nov 4, 2026
ncov-saltational Public
Characterizing SARS-CoV-2 saltational evolution

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blab/ncov-saltational's past year of commit activity

R 0 0 0 0 Updated Nov 3, 2026
blotter-deploy Public
Script to build and deploy Bedford lab website

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blab/blotter-deploy's past year of commit activity

Ruby 0 0 0 1 Updated Oct 23, 2026
blotter Public
bedford lab research

blab/blotter's past year of commit activity

HTML 68 93 2 0 Updated Oct 23, 2026
fitness-flux Public
Fitness flux in SARS-CoV-2 and influenza H3N2

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blab/fitness-flux's past year of commit activity

Wolfram Language 2 2 0 0 Updated Oct 16, 2026
mutational-embedding-vectors Public

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blab/mutational-embedding-vectors's past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Sep 26, 2026
pathogen-embed Public
Create reduced dimension embeddings for pathogen sequences

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blab/pathogen-embed's past year of commit activity

Python 1 MIT 0 3 0 Updated Aug 14, 2026
adaptive-evolution Public
An atlas of continuous adaptive evolution in endemic human viruses

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blab/adaptive-evolution's past year of commit activity

Jupyter Notebook 5 0 0 0 Updated Aug 2, 2026
bacterial-args Public
Recombination-aware bacterial phylgoeography using ARGs

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blab/bacterial-args's past year of commit activity

Jupyter Notebook 0 0 0 1 Updated Jul 22, 2026
rt-from-frequency-dynamics Public
Inferring variant-specific reproduction numbers from case counts and sequencing data

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blab/rt-from-frequency-dynamics's past year of commit activity

Wolfram Language 45 MIT 5 3 1 Updated Jul 6, 2026

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