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API providing access to papers and authors scraped from biorxiv.org
Python
56
10
Analysis framework for integrating gut microbiome and host gene expression data
R
36
16
Plot microbiome time series in parallel
R
27
5
R package for fetching and parsing data of the Human Microbiome Compendium
R
17
3
Hominid: host-microbiome interaction identification
Python
16
4
Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org
Smarty
10
4
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Showing 10 of 19 repositories
blekhmanlab/compendium_website's past year of commit activity
TypeScript
2
1
3
0
Updated Nov 5, 2026
MicroBioMap
Public
R package for fetching and parsing data of the Human Microbiome Compendium
blekhmanlab/MicroBioMap's past year of commit activity
R
17
3
19
1
Updated May 6, 2026
compendium_docs
Public
ReadTheDocs source for the Human Microbiome Compendium web documentation
blekhmanlab/compendium_docs's past year of commit activity
Python
0
0
0
0
Updated Mar 25, 2026
blekhmanlab/snakemake-compendium's past year of commit activity
R
0
0
7
0
Updated Feb 18, 2026
blekhmanlab/milk_infant_microbiome's past year of commit activity
0
GPL-3.0
1
0
0
Updated Feb 3, 2026
blekhmanlab/compendium's past year of commit activity
Python
9
Apache-2.0
0
13
0
Updated Dec 2, 2025
docker_dada2
Public
Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
blekhmanlab/docker_dada2's past year of commit activity
Dockerfile
0
2
2
0
Updated Feb 12, 2025
compendium_v1
Public
Code associated with the first publication describing the Human Microbiome Compendium
blekhmanlab/compendium_v1's past year of commit activity
R
0
0
0
0
Updated Sep 9, 2024
hominid
Public
Hominid: host-microbiome interaction identification
blekhmanlab/hominid's past year of commit activity
Python
16
MIT
4
3
1
Updated Jun 17, 2024
blekhmanlab/snakemake-template's past year of commit activity
Python
0
0
1
0
Updated Nov 16, 2023
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