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1. flu-crew/Flumina flu-crew/Flumina Public

   A pipeline for the analysis of Illumina sequence data from Influenza viruses

   R 6 2

2. FrogCap-Sequence-Capture FrogCap-Sequence-Capture Public

   Probe set files and pipeline for the analysis of data acquired from the Hutter et al. (2021) sequence capture probe set for all frogs

   R 10 2

3. PhyloForge/PhyloProcessR PhyloForge/PhyloProcessR Public

   R package for processing high-throughput sequencing data from targeted sequence capture for phylogenomic analyses

   R 2

4. MitoTrawlR MitoTrawlR Public

   An R package for processing high-throughput sequence data from raw reads to alignments from mitochondrial genomes sequenced as by-catch

   R 2 1

5. PhyloConfigR PhyloConfigR Public

   Configures various phylogenetic software input and output parsing

   R 3

6. FluLens FluLens Public

   Influenza variant visualizer

   HTML 2 1