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python module to plot beautiful and highly customizable genome browser tracks
Python
908
127
Tools to process and analyze deep sequencing data.
Python
774
222
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
C++
282
76
A python extension for quick access to bigWig and bigBed files
C
254
58
A python library for accessing 2bit files
C
21
9
Simple web browser to visualize HiC tracks
JavaScript
19
5
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Showing 10 of 14 repositories
HiCExplorer
Public
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
deeptools/HiCExplorer's past year of commit activity
deeptools4_benchmark
Public
repo for benchmarking, comparison, test data and reference construction for the 25 remake.
deeptools/deeptools4_benchmark's past year of commit activity
Python
0
0
0
0
Updated Nov 10, 2026
pyBigWig
Public
A python extension for quick access to bigWig and bigBed files
deeptools/pyBigWig's past year of commit activity
C
254
MIT
58
9
1
Updated Nov 5, 2026
deepTools
Public
Tools to process and analyze deep sequencing data.
deeptools/deepTools's past year of commit activity
pyGenomeTracks
Public
python module to plot beautiful and highly customizable genome browser tracks
deeptools/pyGenomeTracks's past year of commit activity
Python
908
GPL-3.0
127
22
4
Updated Oct 3, 2026
py2bit
Public
A python library for accessing 2bit files
deeptools/py2bit's past year of commit activity
C
21
MIT
9
0
0
Updated Apr 21, 2026
deeptools/HiCMatrix's past year of commit activity
Python
13
GPL-3.0
8
0
1
Updated Sep 4, 2025
deeptools/github-actions's past year of commit activity
JavaScript
0
MIT
1
0
12
Updated Aug 16, 2023
deeptools/Knight-Ruiz-Matrix-balancing-algorithm's past year of commit activity
C++
10
4
5
1
Updated Apr 13, 2021
HiCBrowser
Public
Simple web browser to visualize HiC tracks
deeptools/HiCBrowser's past year of commit activity
JavaScript
19
GPL-2.0
5
6
2
Updated Dec 12, 2019
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