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1. pyranges/pyranges1 pyranges/pyranges1 Public

   Pyranges: a Python framework for ultrafast sequence interval operations

   Python 65 13

2. pyranges/ruranges_py pyranges/ruranges_py Public

   Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library

   Python 35 6

3. pyranges/pyranges0 pyranges/pyranges0 Public

   Performant Pythonic GenomicRanges

   Python 493 51

4. pyranges/ncls pyranges/ncls Public

   NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.

   C 222 24

5. biocore-ntnu/epic2 biocore-ntnu/epic2 Public

   Ultraperformant reimplementation of SICER

   Cython 60 10

6. pyranges/runlength pyranges/runlength Public

   Generic run-length encoded sequences with plan-based arithmetic (successor to pyrle)

   Rust 1