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GeezerVison is showing github.com — Epiverse-TRACE

README.md

Epiverse is a global collaborative working to develop a trustworthy data analysis ecosystem dedicated to getting ahead of the next public health crisis.

You may learn more about our tools and our work in progress by checking out the following links:

  • The Epiverse-TRACE community site
  • The Epiverse project site

You can also pitch and discuss new project ideas with us! You can follow these links to find:

  • The list of projects being discussed
  • How to propose a new project

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Epiverse-TRACE Contribution graph, created using Herdstat

Popular repositories Loading

  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 44 6

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 39 14

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 22 3

  4. epidemics epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    R 19 7

  5. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 17 5

  6. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 15 5

Repositories

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  • epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

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    epiverse-trace/epiparameter's past year of commit activity
    R 39 14 44 (2 issues need help) 2 Updated Nov 11, 2026
  • tutorials-late Public

    Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.

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    epiverse-trace/tutorials-late's past year of commit activity
    R 2 5 50 0 Updated Nov 10, 2026
  • tutorials-middle Public

    Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.

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    epiverse-trace/tutorials-middle's past year of commit activity
    R 3 6 79 (3 issues need help) 1 Updated Nov 10, 2026
  • tutorials-early Public

    Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.

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    epiverse-trace/tutorials-early's past year of commit activity
    R 5 6 33 0 Updated Nov 10, 2026
  • vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

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    epiverse-trace/vaccineff's past year of commit activity
    R 17 5 3 (1 issue needs help) 1 Updated Oct 20, 2026
  • tutorials Public

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    epiverse-trace/tutorials's past year of commit activity
    R 4 7 50 (3 issues need help) 2 Updated Oct 6, 2026
  • epiparameterDB Public

    Database of epidemiological parameters

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    epiverse-trace/epiparameterDB's past year of commit activity
    R 3 CC0-1.0 1 0 0 Updated Sep 15, 2026
  • superspreading Public

    Estimation of individual-level variation in transmission

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    epiverse-trace/superspreading's past year of commit activity
    R 5 2 5 0 Updated Sep 7, 2026
  • simulist Public

    An R package for simulating line lists

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    epiverse-trace/simulist's past year of commit activity
    R 11 2 7 1 Updated Sep 7, 2026
  • epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

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    There was an error while loading. Please reload this page.

    epiverse-trace/epidemics's past year of commit activity
    R 19 7 12 (1 issue needs help) 5 Updated Sep 1, 2026
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