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Toolbox for the analysis of smFISH images.
Python
91
27
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Showing 10 of 13 repositories
fish-quant/autofish-analysis's past year of commit activity
Jupyter Notebook
1
MIT
0
0
0
Updated Feb 20, 2026
autofish
Public
Python code to control automated iterative FISH system
fish-quant/autofish's past year of commit activity
Python
8
MIT
0
7
0
Updated Jan 29, 2026
fish-quant/pipeline_HOX_apiFISH's past year of commit activity
Jupyter Notebook
0
BSD-3-Clause
0
0
0
Updated Nov 12, 2025
fish-quant/rna2seg's past year of commit activity
Python
25
MIT
2
5
0
Updated May 15, 2025
fish-quant/ComSeg's past year of commit activity
Python
25
MIT
4
6
0
Updated Feb 6, 2025
fish-quant/tutorial_gene_selection's past year of commit activity
Jupyter Notebook
1
0
0
0
Updated Feb 28, 2024
big-fish
Public
Toolbox for the analysis of smFISH images.
fish-quant/big-fish's past year of commit activity
Python
91
BSD-3-Clause
27
18
2
Updated Oct 31, 2023
fq-segmentation
Public
Wrapper code for segmentation of cells and nuclei with Cellpose.
fish-quant/fq-segmentation's past year of commit activity
Python
2
BSD-3-Clause
2
2
1
Updated Jul 19, 2023
fq-imjoy
Public
ImJoy plugins to run different smFISH analysis in a user-friendly setting.
fish-quant/fq-imjoy's past year of commit activity
HTML
4
MIT
2
17
0
Updated Mar 8, 2023
sim-fish
Public
Toolbox to simulate smFISH images.
fish-quant/sim-fish's past year of commit activity
Python
11
BSD-3-Clause
1
1
0
Updated Sep 5, 2022
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