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GeezerVison is showing github.com — Gitter Lab

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  1. nn4dms nn4dms Public

    Neural networks for deep mutational scanning data

    Jupyter Notebook 75 17

  2. metl metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    Python 64 10

  3. metl-sim metl-sim Public

    High-throughput framework for running molecular simulations for METL

    Python 23 6

  4. LPWC LPWC Public

    Lag Penalized Weighted Correlation for Time Series Clustering

    R 21 3

  5. metl-pretrained metl-pretrained Public

    Pretrained METL models with minimal dependencies

    Python 18 4

  6. ml4bio ml4bio Public

    A graphical interface for sklearn classification to introduce machine learning to biologists

    Python 14 3

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  • baseline_text_protein Public

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    Python 0 MIT 0 0 0 Updated Nov 12, 2026
  • metl-pub Public

    Supplementary datasets and scripts for the METL manuscript

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    gitter-lab/metl-pub's past year of commit activity
    Jupyter Notebook 10 MIT 1 0 0 Updated Nov 7, 2026
  • metl-pretrained Public

    Pretrained METL models with minimal dependencies

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    gitter-lab/metl-pretrained's past year of commit activity
    Python 18 MIT 4 1 1 Updated Sep 16, 2026
  • lpca-spras Public Forked from Jeebjean/lpca-spras

    Logistic PCA integration into SPRAS bioinformatics pipeline

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    Python 0 1 0 0 Updated Aug 28, 2026
  • yeast-ppi-af3-su26 Public Forked from Sabah-hoq/yeast-ppi-af3-su26

    Explore AlphaFold3 predicted yeast protein-protein interactions

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    gitter-lab/yeast-ppi-af3-su26's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Aug 28, 2026
  • active-learning-drug-discovery Public

    Iterative chemical screening pipeline for drug discovery

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    Jupyter Notebook 6 MIT 0 13 1 Updated Jul 22, 2026
  • SINGE Public

    Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

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    gitter-lab/SINGE's past year of commit activity
    MATLAB 11 MIT 6 13 3 Updated Jul 6, 2026
  • ALDD-PstP-Results Public

    Active Learning in Drug Discovery PstP Results

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    gitter-lab/ALDD-PstP-Results's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 3, 2026
  • adaptyvbio-nipah Public

    Adaptyv Nipah Binder Competition

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    gitter-lab/adaptyvbio-nipah's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Mar 20, 2026
  • metl Public

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

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    gitter-lab/metl's past year of commit activity
    Python 64 MIT 10 3 1 Updated Feb 3, 2026
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