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scihub scihub Public

Source code and data analyses for the Sci-Hub Coverage Study

Jupyter Notebook 307 41
BioBombe BioBombe Public

BioBombe: Sequentially compressed gene expression features enhances biological signatures

Jupyter Notebook 65 26
lab-website-template lab-website-template Public template

An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

HTML 582 450
covid19-review covid19-review Public

A collaborative review of the emerging COVID-19 literature. Join the chat here:

TeX 119 80
deep-review deep-review Public

A collaboratively written review paper on deep learning, genomics, and precision medicine

HTML 1.3k 268
tybalt tybalt Public

Training and evaluating a variational autoencoder for pan-cancer gene expression data

HTML 175 64

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scrumlord Public
Continuous administration of the Greene Lab's electronic scrum

greenelab/scrumlord's past year of commit activity

Python 13 BSD-3-Clause 10 2 0 Updated Nov 11, 2026
lab-website-template Public template
An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

greenelab/lab-website-template's past year of commit activity

HTML 582 BSD-3-Clause 450 6 0 Updated Nov 11, 2026
hgsoc-reconstruction Public

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greenelab/hgsoc-reconstruction's past year of commit activity

Jupyter Notebook 0 BSD-2-Clause-Patent 1 0 0 Updated Nov 10, 2026
greenelab.com Public
The website source code for greenelab.com

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greenelab/greenelab.com's past year of commit activity

HTML 3 BSD-3-Clause 27 1 0 Updated Nov 9, 2026
T21-eQTL Public
Cohort-scale extension of Hunter et al. (2023) "Transcription dosage compensation does not occur in Down syndrome" (BMC Biology 21:228), applied to the Human Trisome Project (HTP): 304 T21 + 95 Control whole-blood RNA-seq samples, 302 of the T21 subjects with paired chr21 genotypes.

greenelab/T21-eQTL's past year of commit activity

R 0 BSD-3-Clause 1 0 0 Updated Nov 3, 2026
T21-cis-eqtl-Chr21-regulation-manuscript Public
Cis-gene regulation explains most chromosome 21 expression deviations from the ploidy expectation in Down syndrome

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greenelab/T21-cis-eqtl-Chr21-regulation-manuscript's past year of commit activity

HTML 0 CC-BY-4.0 1 6 0 Updated Oct 27, 2026
lab-website-template-docs Public
GitBook documentation for Lab Website Template

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greenelab/lab-website-template-docs's past year of commit activity

3 1 2 0 Updated Oct 26, 2026
HGSOC_Adipocytes Public
Deconvolution of bulk RNA-seq samples of HGSOC including adipocytes.

greenelab/HGSOC_Adipocytes's past year of commit activity

Jupyter Notebook 0 BSD-3-Clause 2 0 0 Updated Oct 20, 2026
multi-dwpc Public
This repository contains scripts testing aggregate degree weighted path count (DWPC) statistics.

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greenelab/multi-dwpc's past year of commit activity

Python 2 BSD-3-Clause 2 0 0 Updated Sep 15, 2026
repository_analysis Public
Analysis of GitHub repository and project content.

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greenelab/repository_analysis's past year of commit activity

Python 0 BSD-3-Clause 1 0 0 Updated Aug 11, 2026