Pinned Loading

1. cellxgene_VIP cellxgene_VIP Public

   Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…

   Jupyter Notebook 165 57

2. CellDepot CellDepot Public

   CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425.

   JavaScript 24 9

3. FundusNet FundusNet Public

   FundusNet: A Deep-Learning Approach for Fast Diagnosis of Neurodegenerative and Eye Diseases Using Fundus Images.

   Jupyter Notebook 8 3

4. ScaleSC ScaleSC Public

   ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167

   Python 42 6

5. xOmicsShiny xOmicsShiny Public

   xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, vbaf097.

   R 40 12

6. iSCALE iSCALE Public

   Forked from amesch441/iSCALE

   Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms

   Python