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@jfy133 jfy133 Follow
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@jfy133
jfy133
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James A. Fellows Yates jfy133

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Senior Data Engineer (personal account)
250 followers · 137 following
  • AstraZeneca
  • Catalunya, Spain
  • 13:20 (UTC +01:00)
  • jafy.eu
  • https://orcid.org/0000-0001-5585-6277
  • in/james-fellows-yates-999859179
  • @[email protected]

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Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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@nf-core @SPAAM-community @sidora-tools @poseidon-framework @miaard
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jfy133/README.md

Hi there 👋, my name is James

I am a bioinformatician / research software engineer, specialising in Nextflow pipelines and (ancient) metagenomics

🤖 I like pipelines, metadata, standards, documenting, and community projects!

🧬 My current research focus is currently on improving throughput and reproducibility of (ancient) metagenomic analysis, and developing standards for (meta)data archiving and reporting of ancient DNA sequencing data.

👪 I'm currently a core-team member of the nf-core initative of standardised Nextflow pipelines and I established the SPAAM-community of ancient metagenomics researchers and the MInAS intiative.

Skills

nextflow

r

bioconda

bash

git

linux


Research

orcid google-scholar


Contact

mastodon linked-in website


Current projects

Static Badge Static Badge Static Badge Static Badge Static Badge

See my pinned repositories

Mastodon

Pinned Loading

  1. nf-core/mag nf-core/mag Public

    Assembly and binning of metagenomes

    Nextflow 328 162

  2. nf-core/funcscan nf-core/funcscan Public

    (Meta-)genome screening for functional and natural product gene sequences

    Nextflow 119 42

  3. nf-core/taxprofiler nf-core/taxprofiler Public

    Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

    Nextflow 195 68

  4. nf-core/createtaxdb nf-core/createtaxdb Public

    Parallelised and automated construction of metagenomic classifier databases of different tools

    Nextflow 22 13

  5. SPAAM-community/AncientMetagenomeDir SPAAM-community/AncientMetagenomeDir Public

    Repository containing lists of all published ancient metagenomic (and related) samples and libraries

    HTML 87 60

  6. MIxS-MInAS/MInAS MIxS-MInAS/MInAS Public

    Repository of proposed and combined MIxS + MInAS standardised metadata checklists using LinkML

    Python 1

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