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GeezerVison is showing github.com โ€” jhrcook - Overview

@jhrcook jhrcook Follow
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๐Ÿฆ–
Exploring!

Josh Cook jhrcook

๐Ÿฆ–
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B.S. in Biology ๐Ÿ”ฌ and Chemistry ๐Ÿงช Ph.D. in Computational Biology ๐Ÿ’ป Sr. Bioinformatics Engineer at Illumina ๐Ÿงฌ
82 followers ยท 0 following
  • Illumina
  • Boston, MA, USA
  • 06:34 (UTC -05:00)
  • https://joshuacook.netlify.app/
  • https://orcid.org/0000-0001-9815-6879
  • in/joshuahrcook

Achievements

Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

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@hms-dbmi @Kevin-Haigis-Lab
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jhrcook/README.md

Joshua Cook

Computational genomics researcher at Vertex Pharmaceuticals.

jhrcook joshdoesa ORCID

For more information about myself, interests, and hobbies, checkout my website, CV, or resume (updates and tailored resumes coming soon). Feel free to get in touch!


๐Ÿ‘จ๐Ÿปโ€๐Ÿ’ป Projects

Currently, I'm working on the 2023 Advent of Code in my attempt to learn the Rust programming language.

To learn new skills and play with fun tools, I have worked on a variety of personal side-projects including

  • building a web API, web interface, and SwiftBar plugin for tracking my coffee consumption,
  • a comparison of ML methods for summarizing scientific articles,
  • experimenting with and packaging the 'tumoroscope' model in PyMC (a probabilistic programming language in Python for building Bayesian models and performing MCMC),
  • and a R package 'mustashe' for intelligently caching computed results.

I've also made small contributions to other projects such as snakemake and the Fig autocomplete repository.

๐Ÿ“ Most recent blogs posts

  • Favorite apps on my Mac
  • Quickstart for playing with LLMs locally
  • Favorite books of 2023
  • Build and push a Rust project to Deta on GitHub Actions
  • Leveraging generic type hints of classes in Python

All of my blog posts can be found here.

๐Ÿ“ž Connect with me

joshdoesa LinkedIn bostonprick https://joshuacook.netlify.app/post/index.xml

๐Ÿ’ธ Support me

joshuacook

Buy Me a Coffee at ko-fi.com




GitHub language statistics.

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  1. advent-of-code-2023-rust advent-of-code-2023-rust Public

    My solutions to Advent of Code 2023 (in Rust).

    Rust 2

  2. tumoroscope-pymc tumoroscope-pymc Public

    Python package of the 'Tumoroscope' model implemented in PyMC.

    Python 2

  3. bayesian-data-analysis-course bayesian-data-analysis-course Public

    My notes and work for the Bayesian Data Analysis course taught by Aki Vehtari.

    R 18 8

  4. mustashe mustashe Public

    A system for stashing and loading the results of long running computations.

    R 8 5

  5. WaterMe WaterMe Public

    An iOS application written in SwiftUI to help log when plants were last watered.

    Swift 7 1

  6. Workout-Spinner-watchapp Workout-Spinner-watchapp Public

    An Apple Watch App that randomly selects quick exercises.

    Swift

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