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GeezerVison is showing github.com β€” lauraporta - Overview

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Laura Porta lauraporta

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Senior Research Software Engineer
68 followers Β· 116 following
  • Sainsbury Wellcome Centre
  • London
  • portalaura.xyz
  • in/portalaura

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Achievement: Pull Sharkx3Achievement: Pair Extraordinairex3Achievement: YOLOAchievement: StarstruckAchievement: Quickdraw

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@SainsburyWellcomeCentre @brainglobe @neuroinformatics-unit @photon-mosaic
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lauraporta/README.md

Hi, I'm Laura πŸ‘‹

Senior Research Software Engineer at the Sainsbury Wellcome Centre (UCL), in the Neuroinformatics Unit and the Margrie Lab.

What I'm building

  • photon-mosaic β€” APIs and automated, reproducible pipelines for multiphoton calcium-imaging data (Snakemake + Slurm); an inter-institute open-source effort with the Allen Institute for Neural Dynamics and the International Brain Laboratory
  • derotation β€” reconstructs clean movies from line-scanned recordings of rotating brains, unblocking analysis that wasn't otherwise possible
  • translocator-models β€” a Python toolkit for modelling population fold-changes in response to sensory stimuli
  • neurodecoders β€” a PyTorch toolkit for reconstructing visual stimuli from brain activity, with MLflow experiment tracking

Beyond the day job 🌱

I'm also a creative coder and live-coder: a Hydra-for-Jupyter integration for generative visuals from notebooks, a creative-coding catalogue (Hydra, p5.js, Python…), and the occasional VJ set at Algoraves β€” sometimes driven by live neural (EEG) data.

Pinned Loading

  1. neuroinformatics-unit/derotation neuroinformatics-unit/derotation Public

    Derotate images acquired via multiphoton calcium imaging

    Python 17 7

  2. neuroinformatics-unit/translocator-models neuroinformatics-unit/translocator-models Public archive

    Evaluate the model for the translocator project

    Python 6

  3. photon-mosaic/photon-mosaic-pipeline photon-mosaic/photon-mosaic-pipeline Public

    Automated and reproducible analysis of multiphoton imaging datasets

    Python 27 5

  4. photon-mosaic/photon-mosaic photon-mosaic/photon-mosaic Public

    Python API for functional imaging in neuroscience

    Python 16 3

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