Mahmudur Rahman Hera mahmudhera

🎯

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mahmudhera/README.md

👋 Hi, I’m @mahmudhera
👀 I’m interested in computational biology and bioinformatics, but my expertise is in modeling problems using mathematics, and solving them using algorithms. I come from a computer science background, and love to connect CS knowledge with biological problems and applications.
🌱 I did my graduate studies in KoslickiLab (https://koslickilab.github.io/Koslicki-lab-PSU/). Currently (January 2026) I am a postdoc at the Kreimer Lab (https://www.anatkreimer.com/).
📫 How to reach me: [email protected], [email protected]

KoslickiLab/fmh-funprofiler KoslickiLab/fmh-funprofiler Public

A functional profiler for metagenomes using FracMinHash

Python 22 7
KoslickiLab/frac-kmc KoslickiLab/frac-kmc Public

Fast FracMinHash sketch generator

C++ 11 2
KoslickiLab/YACHT KoslickiLab/YACHT Public

A mathematically characterized hypothesis test for organism presence/absence in a metagenome

C++ 39 11
KoslickiLab/mutation-rate-ci-calculator KoslickiLab/mutation-rate-ci-calculator Public

This software calculates a confidence interval for the mutation rate from a set of observed containment indices under a simple nucleotide mutation process.

Python 8 1
MaxGeomSampling MaxGeomSampling Public

Forked from KoslickiLab/MaxGeomHash

A sub-linear sampling algorithm

Python

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