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🚂 Python API for Emma's Markov Model Algorithms 🚂
Python
341
129
How to analyze molecular dynamics data with PyEMMA
Jupyter Notebook
89
36
IPython API to visualize MD-trajectories along projected trajectories inside a Jupyter notebook
Python
43
4
Tools for estimating and analyzing Markov state models
Python
42
26
Winter is coming...
Python
15
5
Deep learning meets molecular dynamics.
Jupyter Notebook
190
41
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Showing 10 of 34 repositories
adaptivemd
Public archive
A python framework to run adaptive Markov state model (MSM) simulation on HPC resources
markovmodel/adaptivemd's past year of commit activity
Python
17
LGPL-2.1
8
17
2
Updated Aug 1, 2025
mdshare
Public
Get access to our MD data files.
markovmodel/mdshare's past year of commit activity
Python
33
LGPL-3.0
6
4
1
Updated Nov 22, 2023
PyEMMA
Public archive
🚂 Python API for Emma's Markov Model Algorithms 🚂
markovmodel/PyEMMA's past year of commit activity
Python
341
LGPL-3.0
129
57
0
Updated Sep 11, 2023
markovmodel/ivampnets's past year of commit activity
Python
25
2
1
0
Updated Feb 28, 2023
msmtools
Public
Tools for estimating and analyzing Markov state models
markovmodel/msmtools's past year of commit activity
Python
42
LGPL-3.0
26
0
0
Updated Aug 15, 2022
markovmodel/pyemma-workshop's past year of commit activity
Jupyter Notebook
32
LGPL-3.0
8
2
0
Updated Feb 24, 2022
markovmodel/decomposed_msms's past year of commit activity
Jupyter Notebook
2
0
0
0
Updated Feb 14, 2022
deepmsm
Public
Code to reproduce results for the paper: Progress in deep Markov State Modeling: Coarse graining and experimental data restraints
markovmodel/deepmsm's past year of commit activity
Jupyter Notebook
8
3
0
0
Updated Oct 19, 2021
markovmodel/msmrd2's past year of commit activity
C++
5
1
0
0
Updated Mar 18, 2021
markovmodel/PyEMMA_IPython's past year of commit activity
Jupyter Notebook
13
12
2
0
Updated Jan 28, 2021
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