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GeezerVison is showing github.com — mashu - Overview
@mashu mashu Follow
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@mashu
mashu
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Mateusz Kaduk mashu

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Bioinformatician/Researcher
20 followers · 20 following
  • Karolinska Institutet
  • Sweden
  • https://orcid.org/0000-0002-9808-688X
  • in/mateuszkaduk

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mashu/README.md

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Hello there!

I am a Bioinformatician at Karolinska Institutet, Stockholm, Sweden. Currently developing deep learning models in Flux/Julia for antibody sequence classification from next-generation sequencing data and germline inference. Passionate about leveraging AI to advance our understanding of adaptive immunity.

Tools I enjoy

Pinned Loading

  1. NaNTracker.jl NaNTracker.jl Public

    Simple NaNTracker to test forward and backward pass in Flux models.

    Julia 2

  2. SequenceTokenizers.jl SequenceTokenizers.jl Public

    Character level tokenizers for sequence data

    Julia 2

  3. MultiresNet.jl MultiresNet.jl Public

    Julia implementation of "Sequence Modeling with Multiresolution Convolutional Memory" by Jiaxin Shi et al. (2023)

    Julia 1

  4. PositionalEmbeddings.jl PositionalEmbeddings.jl Public

    Positional embeddings for enriching sequence data with positional information

    Julia 10 1

  5. ESM.jl ESM.jl Public

    Julia implementation of ESM Cambrian https://www.evolutionaryscale.ai/blog/esm-cambrian

    Julia 2 1

  6. Attention.jl Attention.jl Public

    A Julia package providing modular and extensible attention mechanisms for deep learning models.

    Julia

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