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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 420 219

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 166 70

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 34 20

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 62 27

Repositories

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Showing 10 of 253 repositories
  • smile-messaging-java Public

    CMO Messaging Library

    mskcc/smile-messaging-java's past year of commit activity
    Java 0 AGPL-3.0 4 0 0 Updated Nov 12, 2026
  • facets-preview Public Forked from taylor-lab/facets-preview

    Load, review and adjust facets fits

    mskcc/facets-preview's past year of commit activity
    R 2 3 14 0 Updated Nov 12, 2026
  • swabnseq Public
    mskcc/swabnseq's past year of commit activity
    Python 0 0 0 0 Updated Nov 12, 2026
  • igo-genomics Public
    mskcc/igo-genomics's past year of commit activity
    Vue 0 0 3 1 Updated Nov 12, 2026
  • voyager-sdk Public
    mskcc/voyager-sdk's past year of commit activity
    Python 3 Apache-2.0 0 0 1 Updated Nov 11, 2026
  • ridgeback Public

    Toil API

    mskcc/ridgeback's past year of commit activity
    Python 1 Apache-2.0 2 38 5 Updated Nov 10, 2026
  • beagle Public

    Voyager Backend

    mskcc/beagle's past year of commit activity
    Python 2 Apache-2.0 8 99 (2 issues need help) 13 Updated Nov 10, 2026
  • NeoQual-nf Public

    Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

    mskcc/NeoQual-nf's past year of commit activity
    Nextflow 10 MIT 1 13 2 Updated Nov 10, 2026
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node's past year of commit activity
    JavaScript 0 2 1 (1 issue needs help) 32 Updated Nov 9, 2026
  • igo-run-qc-node Public
    mskcc/igo-run-qc-node's past year of commit activity
    JavaScript 0 1 0 2 Updated Nov 9, 2026
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