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Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Perl
420
219
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
R
166
70
Filters for false-positive mutation calls in NGS
R
34
20
Forked from rhshah/iCallSV
A Framework to call Structural Variants from NGS based datasets
Python
3
1
Create mutation signatures from MAF's, and decompose them into Stratton signatures
R
62
27
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NeoQual-nf
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Pipeline for computing neoantigen qualities from DNA and RNA-Seq data
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