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dorado dorado Public

Oxford Nanopore's Basecaller

C++ 886 133
medaka medaka Public

Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data

Python 528 90
pod5-file-format pod5-file-format Public

Pod5: a high performance file format for nanopore reads.

C++ 178 44
modkit modkit Public

A bioinformatics tool for working with modified bases

Rust 281 36

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Showing 10 of 77 repositories

hatch-protobuf Public
Hatch plugin for generating Python files from Protocol Buffers .proto files

nanoporetech/hatch-protobuf's past year of commit activity

Python 14 6 1 1 Updated Nov 10, 2026
minknow_api Public
Protobuf and gRPC specifications for the MinKNOW API

nanoporetech/minknow_api's past year of commit activity

Python 73 17 47 2 Updated Nov 5, 2026
mahi-mahi Public
Mahi-mahi is a command-line bioinformatics tool for analyzing tandem repeat loci from long-read nanopore sequencing data.

nanoporetech/mahi-mahi's past year of commit activity

Python 22 1 0 0 Updated Oct 16, 2026
pod5-file-format Public
Pod5: a high performance file format for nanopore reads.

nanoporetech/pod5-file-format's past year of commit activity

C++ 178 44 47 4 Updated Oct 8, 2026
rerio Public
Research release basecalling models and configurations

nanoporetech/rerio's past year of commit activity

Python 121 11 5 1 Updated Sep 7, 2026
dorado Public
Oxford Nanopore's Basecaller

nanoporetech/dorado's past year of commit activity

C++ 886 133 91 (1 issue needs help) 6 Updated Sep 3, 2026
ont-minimap2 Public
Cross platform builds for minimap2

nanoporetech/ont-minimap2's past year of commit activity

CMake 9 3 0 0 Updated Jul 15, 2026
modkit Public
A bioinformatics tool for working with modified bases

nanoporetech/modkit's past year of commit activity

Rust 281 36 308 24 Updated Jul 14, 2026
pomoxis Public
Analysis components from Oxford Nanopore Research

nanoporetech/pomoxis's past year of commit activity

Python 99 22 10 1 Updated Jul 1, 2026
medaka Public
Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data

nanoporetech/medaka's past year of commit activity

Python 528 90 29 3 Updated May 20, 2026

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nanopore cdna basecalling rna-seq transcriptomics