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Models of COVID-19 outbreak trajectories and hospital demand
JavaScript
1.4k
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Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
Jupyter Notebook
257
64
Processing pipeline for pan-genome visulization and exploration
Python
147
37
A bioinformatic toolkit to align genome assemblies into pangenome graphs
C
129
6
Informal summaries of notable SARS-CoV-2 lineages
112
12
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Showing 10 of 107 repositories
neherlab/treetime-nightly's past year of commit activity
0
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0
Updated Nov 12, 2026
treetime
Public
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
neherlab/treetime's past year of commit activity
Jupyter Notebook
257
MIT
64
42
7
Updated Nov 12, 2026
neherlab/pan-genome-analysis's past year of commit activity
Python
147
GPL-3.0
37
34
1
Updated Nov 11, 2026
treeknit
Public
Infers reassortment from the trees of the segments of a virus, such as the HA and NA trees of influenza
neherlab/treeknit's past year of commit activity
Rust
1
MIT
0
0
0
Updated Nov 3, 2026
neherlab/hivwholeweb's past year of commit activity
HTML
1
5
0
0
Updated Nov 2, 2026
pangraph
Public
A bioinformatic toolkit to align genome assemblies into pangenome graphs
neherlab/pangraph's past year of commit activity
C
129
MIT
6
7
9
Updated Oct 28, 2026
neherlab/nextclade_data_workflows's past year of commit activity
Python
6
1
12
1
Updated Oct 27, 2026
neherlab/bioconda-recipes's past year of commit activity
Shell
0
MIT
4,247
0
0
Updated Oct 21, 2026
neherlab/PoL1-course-materials's past year of commit activity
Jupyter Notebook
4
0
0
0
Updated Oct 14, 2026
neherlab/mut-fitness-general's past year of commit activity
Python
0
MIT
3
0
0
Updated Oct 12, 2026
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