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Nextstrain build for SARS-CoV-2
Python
1.4k
408
Pipeline components for real-time phylodynamic analysis
Python
280
139
Web app for visualizing pathogen evolution
JavaScript
312
173
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Showing 10 of 105 repositories
ebola
Public
Nextstrain build for Ebola virus
nextstrain/ebola's past year of commit activity
Python
7
11
12
4
Updated Nov 12, 2026
nextstrain/nextclade_data's past year of commit activity
nextstrain/variant-nowcast-hub's past year of commit activity
R
0
MIT
18
0
0
Updated Nov 11, 2026
nextclade
Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
nextstrain/nextclade's past year of commit activity
ncov
Public
Nextstrain build for SARS-CoV-2
nextstrain/ncov's past year of commit activity
nextstrain/nextstrain.org's past year of commit activity
JavaScript
96
AGPL-3.0
57
71
15
Updated Nov 11, 2026
nextstrain/docs.nextstrain.org's past year of commit activity
Python
18
13
25
2
Updated Nov 11, 2026
augur
Public
Pipeline components for real-time phylodynamic analysis
nextstrain/augur's past year of commit activity
measles
Public
Nextstrain build for measles virus
nextstrain/measles's past year of commit activity
Python
4
9
7
2
Updated Nov 10, 2026
cli
Public
The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
nextstrain/cli's past year of commit activity
Python
28
MIT
20
71
5
Updated Nov 9, 2026