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Fast FASTX parsing and k-mer methods in Rust
Rust
216
36
B-field implementation in Rust
Rust
204
5
A genomic minhashing implementation in Rust
Rust
100
8
Python and Rust library for loading, saving, and manipulating taxonomic trees
Rust
54
3
Command line interface and Python client library for the One Codex API
Python
25
12
SARS-CoV-2 variant calling and consensus assembly pipeline
Jupyter Notebook
25
6
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Showing 10 of 63 repositories
onecodex
Public
Command line interface and Python client library for the One Codex API
onecodex/onecodex's past year of commit activity
Python
25
MIT
12
28
2
Updated Nov 9, 2026
needletail
Public
Fast FASTX parsing and k-mer methods in Rust
onecodex/needletail's past year of commit activity
Rust
216
MIT
36
14
1
Updated Nov 7, 2026
chrononaut
Public
A history mixin with audit logging, record locking, and time travel for FlaskSQLAlchemy
onecodex/chrononaut's past year of commit activity
Python
19
MIT
4
3
2
Updated Nov 6, 2026
taxonomy
Public
Python and Rust library for loading, saving, and manipulating taxonomic trees
onecodex/taxonomy's past year of commit activity
Rust
54
MIT
3
9
1
Updated Nov 5, 2026
onecodex/onecodex-skill's past year of commit activity
1
MIT
0
0
0
Updated Nov 5, 2026
onecodex/docker-onecodex-notebook's past year of commit activity
HTML
2
MIT
1
0
1
Updated Oct 9, 2026
finch-rs
Public
A genomic minhashing implementation in Rust
onecodex/finch-rs's past year of commit activity
Rust
100
MIT
8
13
2
Updated Jul 8, 2026
onecodex/taxonomy-time-machine's past year of commit activity
Vue
10
MIT
1
1
0
Updated May 7, 2026
docker-onecodex-cli
Public
DEPRECATED: Old image with One Codex CLI - please install directly now
onecodex/docker-onecodex-cli's past year of commit activity
Python
0
0
0
1
Updated Dec 8, 2025
gdl
Public
Forked from
audy/gdl
A fast, easy-to-use, command-line tool for downloading genome assemblies from NCBI GenBank (RefSeq).
onecodex/gdl's past year of commit activity
Rust
1
MIT
1
0
0
Updated Jul 22, 2025
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