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Project metadata manager for biological sample metadata in Python
Python
41
13
Modular job submitter for arbitrary pipelines or commands.
Python
25
7
Builds a PEP from SRA or GEO accessions
Python
55
6
Project metadata manager for PEPs in R
R
3
1
Documentation for PEP specification and all PEPkit software
Python
10
4
A web API and database for biological sample metadata
TypeScript
22
2
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Showing 10 of 44 repositories
pepspec
Public
Documentation for PEP specification and all PEPkit software
pepkit/pepspec's past year of commit activity
Python
10
4
4
0
Updated Nov 11, 2026
pepembed
Public
Indexer of pephub database
pepkit/pepembed's past year of commit activity
Python
1
0
1
0
Updated Nov 9, 2026
geopephub
Public
Automatic uploader of GEO metadata to PEPhub.
pepkit/geopephub's past year of commit activity
Python
0
BSD-2-Clause
1
0
0
Updated Nov 9, 2026
pephub
Public
A web API and database for biological sample metadata
pepkit/pephub's past year of commit activity
peprs
Public
PEP implementation in memory safe language Rust
pepkit/peprs's past year of commit activity
Rust
3
MIT
0
6
2
Updated Oct 24, 2026
looper
Public
Modular job submitter for arbitrary pipelines or commands.
pepkit/looper's past year of commit activity
pipestat
Public
Pipeline results reporting package
pepkit/pipestat's past year of commit activity
Python
4
BSD-2-Clause
2
10
2
Updated Oct 22, 2026
pepdbagent
Public
Database for storing sample metadata
pepkit/pepdbagent's past year of commit activity
pephubclient
Public
A tool to provide Python and CLI interface and Python API for PEPhub.
pepkit/pephubclient's past year of commit activity
geofetch
Public
Builds a PEP from SRA or GEO accessions
pepkit/geofetch's past year of commit activity
Python
55
BSD-2-Clause
6
7
0
Updated Oct 2, 2026
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