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GeezerVison is showing github.com — The physiopy community

README.md

Welcome to the Physiopy community

Physiopy’s aim is to improve the quality of physiological data collection and application in neuroimaging research through community discussion and open source tool development.

We are an international group of volunteers that have developed a suite of Python libraries to help researchers process physiological files, particularly when recorded alongside neuroimaging acquisitions. These libraries vary from formatting physiological files into a standard format, data quality control, peak detection analyses and preparing physiological data for fMRI denoising.

🌐 Check out our Website, which includes our Contributor Guide and Code of Conduct.

📝 Read our Community Practices, where you can find advice and recommendations for physiological data acquisition, preprocessing, and analysis.

  • 📝 Read our recent publication "Community-recommended practices for collecting physiological data in functional MRI: The “Physiopy” approach" published in Aperture Neuro in 2026.

🧑‍💻 We meet virtually, typically every third Thursday of the month. To join (and for other general enquiries about where to keep up to date with community updates and discussions) email [email protected].

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  1. physiopy physiopy Public

    Metapackage for physiopy repository

    Python 2 5

  2. phys2bids phys2bids Public

    Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

    Python 66 49

  3. phys2denoise phys2denoise Public

    A toolbox and collection of scripts to prepare physiology data for fMRI denoise

    Python 10 20

  4. physioqc physioqc Public

    Toolbox for physiological data (Automagic) Quality Control

    Python 3 8

  5. prep4phys prep4phys Public

    A toolbox for physiological peak detection analyses. Formerly peakdet.

    Python 1 3

  6. peakdet peakdet Public

    Toolbox for physiological peak detection analyses. Soon to be deprecated in favour of prep4phys

    Python 28 22

Repositories

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Showing 10 of 19 repositories
  • peakdet Public

    Toolbox for physiological peak detection analyses. Soon to be deprecated in favour of prep4phys

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    physiopy/peakdet's past year of commit activity
    Python 28 Apache-2.0 22 6 (3 issues need help) 5 Updated Nov 9, 2026
  • physiopy-repository-template Public template

    Template repository for physiopy

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    physiopy/physiopy-repository-template's past year of commit activity
    Python 1 Unlicense 1 0 0 Updated Nov 9, 2026
  • physiopy-community-practices Public

    Repository for Physiopy's community guidelines

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    physiopy/physiopy-community-practices's past year of commit activity
    Python 2 CC-BY-SA-4.0 3 17 1 Updated Nov 6, 2026
  • .github Public

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    physiopy/.github's past year of commit activity
    0 CC-BY-4.0 0 0 0 Updated Nov 6, 2026
  • bids-specification-physio Public Forked from bids-standard/bids-specification

    Physiological Data Extension Proposal for the Brain Imaging Data Structure (BIDS) Specification *** NEWCOMERS, please navigate to the below Discussions page to get started: https://github.com/physiopy/bids-specification-physio/discussions/1

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    physiopy/bids-specification-physio's past year of commit activity
    Python 0 CC-BY-4.0 210 13 3 Updated Nov 5, 2026
  • phys2denoise Public

    A toolbox and collection of scripts to prepare physiology data for fMRI denoise

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    physiopy/phys2denoise's past year of commit activity
    Python 10 Apache-2.0 20 22 (2 issues need help) 7 Updated Nov 2, 2026
  • physioqc Public

    Toolbox for physiological data (Automagic) Quality Control

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    physiopy/physioqc's past year of commit activity
    Python 3 Apache-2.0 8 11 (1 issue needs help) 3 Updated Nov 2, 2026
  • phys2bids Public

    Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

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    physiopy/phys2bids's past year of commit activity
    Python 66 Apache-2.0 49 51 (3 issues need help) 9 Updated Nov 2, 2026
  • physiopy-governance Public

    Governance of physiopy

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    physiopy/physiopy-governance's past year of commit activity
    0 CC-BY-4.0 2 6 1 Updated Jul 15, 2026
  • bids-examples Public Forked from bids-standard/bids-examples

    A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

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    physiopy/bids-examples's past year of commit activity
    MATLAB 0 156 0 0 Updated Jun 4, 2026
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