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STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Jupyter Notebook
184
51
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Python
359
120
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
HTML
49
12
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
Python
32
10
Explore the effect of genetic variants on transcription factor binding sites
Python
9
4
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Showing 10 of 71 repositories
pinellolab/CRISPRLungo's past year of commit activity
Python
13
4
0
0
Updated Nov 11, 2026
CRISPResso2
Public
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
pinellolab/CRISPResso2's past year of commit activity
CRISPRitz
Public
Tool package to perform in-silico CRISPR analysis and assessment
pinellolab/CRISPRitz's past year of commit activity
C++
43
11
0
2
Updated Nov 10, 2026
crisprme-plus
Public
CRISPRme+ — web/data-manager + optimization successor lineage to CRISPRme
pinellolab/crisprme-plus's past year of commit activity
Python
3
1
0
3
Updated Nov 5, 2026
DNA-Diffusion
Public
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
pinellolab/DNA-Diffusion's past year of commit activity
Python
491
63
1
6
Updated Oct 28, 2026
pinellolab/CRISPR_Pipeline's past year of commit activity
Python
16
MIT
13
8
6
Updated Oct 28, 2026
PyroPPI
Public
Hierarchical Bayesian modelling of PPI Recorder screens
pinellolab/PyroPPI's past year of commit activity
Jupyter Notebook
0
AGPL-3.0
0
0
0
Updated Oct 19, 2026
chorus
Public
One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English analysis through MCP.
pinellolab/chorus's past year of commit activity
Python
72
MIT
14
0
1
Updated Oct 15, 2026
crisprme-skill
Public
Claude Code Agent Skill for running CRISPRme+ variant- and haplotype-aware CRISPR off-target searches from plain-language requests
pinellolab/crisprme-skill's past year of commit activity
Python
0
0
0
0
Updated Oct 14, 2026
CRISPRme
Public
Variant-aware CRISPR off-target nomination
pinellolab/CRISPRme's past year of commit activity
Python
28
10
2
3
Updated Oct 8, 2026
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