Pinned Loading

1. ganon ganon Public

   ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hie…

   Python 109 14

2. multitax multitax Public

   A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

   Python 53 5

3. genome_updater genome_updater Public

   genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity…

   Shell 176 19

4. grimer grimer Public

   GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.

   Python 29 3

5. dudes dudes Public

   DUDes: a top-down taxonomic profiler for metagenomics and metaproteomics

   Python 9 1

6. taxsbp taxsbp Public

   TaxSBP - Taxonomic structured bin packing implementation

   Python 8 5