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README.md

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QuPath is open-source software for bioimage analysis.

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qupath qupath Public

QuPath - Open-source bioimage analysis for research

Java 1.5k 363
qupath-docs qupath-docs Public

QuPath documentation

Python 24 28
qupath-extension-djl qupath-extension-djl Public

A QuPath extension for working with Deep Java Library (https://djl.ai)

Java 10 7
qupath-extension-instanseg qupath-extension-instanseg Public

The official QuPath extension for InstanSeg

Java 30 5
qupath-extension-omero qupath-extension-omero Public

QuPath extension to work with images through OMERO's APIs

Java 9 3
qupath-extension-template qupath-extension-template Public template

Template to help create a new QuPath extension

Java 21 16

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Showing 10 of 51 repositories

qupath Public
QuPath - Open-source bioimage analysis for research

qupath/qupath's past year of commit activity

Java 1,477 GPL-3.0 363 31 4 Updated Nov 11, 2026
qupath-bioimageio-spec Public
Support for parsing the BioImage Model Zoo spec in Java

qupath/qupath-bioimageio-spec's past year of commit activity

Java 0 MIT 2 2 0 Updated Nov 11, 2026
qupath.github.io Public
GitHub pages site

qupath/qupath.github.io's past year of commit activity

SCSS 2 MIT 5 0 0 Updated Nov 11, 2026
log-viewer Public

qupath/log-viewer's past year of commit activity

Java 6 Apache-2.0 2 2 0 Updated Nov 9, 2026
qupath-extension-bioimageio Public
A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

qupath/qupath-extension-bioimageio's past year of commit activity

Java 5 Apache-2.0 3 0 0 Updated Nov 2, 2026
qupath-catalog Public
The catalog containing QuPath extensions developed by the QuPath team

qupath/qupath-catalog's past year of commit activity

1 Apache-2.0 3 0 1 Updated Oct 28, 2026
qupath-imglib2 Public
A Java library to link QuPath and ImgLib2

qupath/qupath-imglib2's past year of commit activity

Java 1 Apache-2.0 2 0 0 Updated Oct 26, 2026
libczi-jars Public

qupath/libczi-jars's past year of commit activity

0 0 0 0 Updated Oct 20, 2026
qupath-extension-omero Public
QuPath extension to work with images through OMERO's APIs

qupath/qupath-extension-omero's past year of commit activity

Java 9 Apache-2.0 3 4 0 Updated Oct 18, 2026
qubalab Public
Lab for quantitative bioimage analysis experiments in Python

qupath/qubalab's past year of commit activity

Python 21 Apache-2.0 6 0 0 Updated Oct 7, 2026

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