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1. vamb vamb Public

   Variational autoencoder for metagenomic binning

   Python 335 51

2. MOVE MOVE Public

   MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

   Jupyter Notebook 100 34

3. phamb phamb Public

   Downstream processing of VAMB binning for Viral Elucidation

   Python 56 7

4. pimms pimms Public

   Imputing proteomics data using deep learning models

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5. PlasMAAG PlasMAAG Public

   PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples

   Python 34 5

6. SLIM SLIM Public

   SLIM is a small bilinear model that uses gene embeddings (e.g. STRING) to predict single-cell genetic perturbation responses.

   Python 11