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Tools (written in C using htslib) for manipulating next-generation sequencing data
C
2k
627
C library for high-throughput sequencing data formats
C
957
484
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
C
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Specifications of SAM/BAM and related high-throughput sequencing file formats
TeX
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180
A Java API for high-throughput sequencing data (HTS) formats.
Java
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244
tabix
tabix
Public archive
Note: tabix and bgzip binaries are now part of the HTSlib project.
C
92
38
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Showing 10 of 16 repositories
htscodecs
Public
Custom compression for CRAM and others.
samtools/htscodecs's past year of commit activity
C
39
22
0
2
Updated Nov 12, 2026
samtools
Public
Tools (written in C using htslib) for manipulating next-generation sequencing data
samtools/samtools's past year of commit activity
samtools/bcftools's past year of commit activity
htslib
Public
C library for high-throughput sequencing data formats
samtools/htslib's past year of commit activity
htsjdk
Public
A Java API for high-throughput sequencing data (HTS) formats.
samtools/htsjdk's past year of commit activity
samtools/www.htslib.org's past year of commit activity
HTML
9
14
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0
Updated Oct 27, 2026
hts-specs
Public
Specifications of SAM/BAM and related high-throughput sequencing file formats
samtools/hts-specs's past year of commit activity
c-maint
Public
Maintenance scripts used with the htslib/samtools/bcftools repositories
samtools/c-maint's past year of commit activity
Perl
3
5
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1
Updated Sep 14, 2026
central-9643
Public
Temporary repository to enable verification with Sonatype Central team
samtools/central-9643's past year of commit activity
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Updated Apr 2, 2026
samtools/htslib-crypt4gh's past year of commit activity
C
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Updated Sep 22, 2023