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GeezerVison is showing github.com — samtools

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  1. samtools samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 2k 627

  2. htslib htslib Public

    C library for high-throughput sequencing data formats

    C 957 484

  3. bcftools bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    C 903 288

  4. hts-specs hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 717 180

  5. htsjdk htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    Java 303 244

  6. tabix tabix Public archive

    Note: tabix and bgzip binaries are now part of the HTSlib project.

    C 92 38

Repositories

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Showing 10 of 16 repositories
  • htscodecs Public

    Custom compression for CRAM and others.

    samtools/htscodecs's past year of commit activity
    C 39 22 0 2 Updated Nov 12, 2026
  • samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

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    samtools/samtools's past year of commit activity
    C 1,975 627 178 23 Updated Nov 12, 2026
  • bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

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    There was an error while loading. Please reload this page.

    samtools/bcftools's past year of commit activity
    C 903 288 271 13 Updated Nov 11, 2026
  • htslib Public

    C library for high-throughput sequencing data formats

    samtools/htslib's past year of commit activity
    C 957 484 139 37 Updated Nov 10, 2026
  • htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    samtools/htsjdk's past year of commit activity
    Java 303 244 56 16 Updated Oct 30, 2026
  • www.htslib.org Public

    The http://www.htslib.org/ web site

    samtools/www.htslib.org's past year of commit activity
    HTML 9 14 3 0 Updated Oct 27, 2026
  • hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    samtools/hts-specs's past year of commit activity
    TeX 717 180 199 39 Updated Oct 20, 2026
  • c-maint Public

    Maintenance scripts used with the htslib/samtools/bcftools repositories

    samtools/c-maint's past year of commit activity
    Perl 3 5 0 1 Updated Sep 14, 2026
  • central-9643 Public

    Temporary repository to enable verification with Sonatype Central team

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    samtools/central-9643's past year of commit activity
    0 0 0 0 Updated Apr 2, 2026
  • htslib-crypt4gh Public

    HTSlib crypt4gh plug-in

    samtools/htslib-crypt4gh's past year of commit activity
    C 3 2 1 0 Updated Sep 22, 2023
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