Description

hinerm

opened on Apr 7, 2022

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I ran into the following failures when building the melting pot with a J11 JDK:

[FAILURE] io.scif/scifio
[FAILURE] io.scif/scifio-hdf5
[FAILURE] io.scif/scifio-jai-imageio
[FAILURE] net.imagej/ij1-patcher
[FAILURE] net.imagej/imagej-tensorflow
[FAILURE] net.imglib2/imglib2-label-multisets
[FAILURE] net.imglib2/imglib2-unsafe
[FAILURE] org.scijava/native-lib-loader
[FAILURE] org.scijava/parsington
[FAILURE] org.scijava/scijava-common
[FAILURE] org.scijava/scripting-java
[FAILURE] sc.fiji/IO_
[FAILURE] sc.fiji/LSM_Toolbox
[FAILURE] sc.fiji/Vaa3d_Reader
[FAILURE] sc.fiji/bigwarp_fiji
[FAILURE] sc.fiji/fiji-lib
[FAILURE] sc.fiji/labkit-ui

I was testing J11 because ImageJ 1.x requires J9+ for module-info processing. A future enhancement for the melting pot would be to add logic that detects the declared Java version in the pom and builds with that version.

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1. ctrueden commented on Apr 7, 2022

   

   ctrueden

   on Apr 7, 2022

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   @hinerm Thanks. Do you still have the build logs for those failures? Would it be possible to post some abbreviated summary of each failure? Only if it's easy though—of course when pursuing this issue we'll have to reproduce the failures regardless.
2. ctrueden commented on Apr 7, 2022

   

   ctrueden

   on Apr 7, 2022

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   io.scif:scifio:

   [ERROR] Tests run: 2, Failures: 0, Errors: 2, Skipped: 0, Time elapsed: 0.019 s <<< FAILURE! - in io.scif.formats.JPEG2000FormatTest
   [ERROR] testOne(io.scif.formats.JPEG2000FormatTest)  Time elapsed: 0.001 s  <<< ERROR!
   java.lang.NoClassDefFoundError: javax/xml/bind/DatatypeConverter
   	at io.scif.formats.JPEG2000FormatTest.testOne(JPEG2000FormatTest.java:54)
   

   io.scif:scifio-jhdf5: builds for me with Zulu JDK 11 on macOS:

   $ java -version
   openjdk version "11.0.12" 2021-07-20 LTS
   OpenJDK Runtime Environment Zulu11.50+19-CA (build 11.0.12+7-LTS)
   OpenJDK 64-Bit Server VM Zulu11.50+19-CA (build 11.0.12+7-LTS, mixed mode)
   

   io.scif:scifio-jai-imageio:

   [WARNING] Rule 2: org.apache.maven.plugins.enforcer.RequireJavaVersion failed with message:
   Detected JDK Version: 11.0.12 is not in the allowed range [1.8.0-101,1.8.9999].
   

   So it may actually be that a bunch of these just need a pom-scijava parent update to support the downward cross-compilation from 11 to 8.
3. ctrueden commented on Apr 7, 2022

   

   ctrueden

   on Apr 7, 2022

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   io.scif:scifio-jai-imageio: Targets Java 1.5, so it can't use OpenJDK 11 to build because OpenJDK's minimum target version is 8.

   sc.fiji:IO_:

   [ERROR] /Volumes/Code/fiji/IO/src/main/java/sc/fiji/io/SVG_Reader.java:[76,34] cannot access org.w3c.dom.css.ViewCSS
     class file for org.w3c.dom.css.ViewCSS not found
   [ERROR] /Volumes/Code/fiji/IO/src/main/java/sc/fiji/io/SVG_Reader.java:[77,34] cannot access org.w3c.dom.css.DocumentCSS
     class file for org.w3c.dom.css.DocumentCSS not found
   

   sc.fiji:LSM_Toolbox:

   sc.fiji:Vaa3d_Reader: Fixed with fiji/Vaa3d_Reader@680c26d

   [ERROR] Tests run: 9, Failures: 0, Errors: 8, Skipped: 0, Time elapsed: 0.101 s <<< FAILURE! - in org.janelia.vaa3d.reader.TestVaa3d_Reader
   [ERROR] testVaa3dPbdRawSameDataSmallRead(org.janelia.vaa3d.reader.TestVaa3d_Reader)  Time elapsed: 0.018 s  <<< ERROR!
   java.lang.NullPointerException
   	at org.janelia.vaa3d.reader.TestVaa3d_Reader.testVaa3dDataEquality(TestVaa3d_Reader.java:88)
   	at org.janelia.vaa3d.reader.TestVaa3d_Reader.testVaa3dPbdRawSameDataSmallRead(TestVaa3d_Reader.java:15)
   

   sc.fiji:bigwarp_fiji:

   [ERROR] /Volumes/Code/fiji-ext/bigwarp/src/main/java/bigwarp/BigWarpInit.java:[478,109] incompatible types: java.lang.Object cannot be converted to net.imglib2.type.numeric.NumericType
   [ERROR] /Volumes/Code/fiji-ext/bigwarp/src/main/java/bigwarp/BigWarpInit.java:[482,109] incompatible types: java.lang.Object cannot be converted to net.imglib2.type.numeric.NumericType
   [ERROR] /Volumes/Code/fiji-ext/bigwarp/src/main/java/bigwarp/BigWarpInit.java:[524,57] incompatible types: java.lang.Object cannot be converted to net.imglib2.type.numeric.NumericType
   

   sc.fiji:fiji-lib:

   [ERROR] runPlugInTest(fiji.DebugTest)  Time elapsed: 1.583 s  <<< ERROR!
   java.lang.IllegalArgumentException:
   Cannot add class path from ClassLoader of type jdk.internal.loader.ClassLoaders$AppClassLoader
   
   	at fiji.DebugTest.runPlugInTest(DebugTest.java:60)
   

   (net.imagej:ij1-patcher has this same problem)
4. ctrueden

   added this to the java-11 milestone on Feb 1, 2023

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