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Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
C++
467
51
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
C++
270
42
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
C++
224
30
Read and write Neuroglancer datasets programmatically.
Python
176
56
Python wrapper for Google's Draco mesh compression library.
Python
123
33
Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).
C++
95
32
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Showing 10 of 190 repositories
cloud-volume
Public
Read and write Neuroglancer datasets programmatically.
seung-lab/cloud-volume's past year of commit activity
Python
176
BSD-3-Clause
56
86
7
Updated Nov 12, 2026
tinybrain
Public
Image pyramid generation for grayscale and segmentation image resize.
seung-lab/tinybrain's past year of commit activity
Python
12
GPL-3.0
0
5
0
Updated Nov 12, 2026
seung-lab/ng-extend's past year of commit activity
JavaScript
6
8
4
29
Updated Nov 12, 2026
cloud-files
Public
Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
seung-lab/cloud-files's past year of commit activity
Python
45
BSD-3-Clause
11
16
1
Updated Nov 11, 2026
igneous
Public
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
seung-lab/igneous's past year of commit activity
Python
69
GPL-3.0
25
30
3
Updated Nov 11, 2026
seung-lab/neuroglancer's past year of commit activity
TypeScript
25
Apache-2.0
427
91
41
Updated Nov 11, 2026
CAVEpipelines
Public
Instructions for creating chunkedgraph, initial meshing, l2cache etc
seung-lab/CAVEpipelines's past year of commit activity
Python
7
MPL-2.0
6
0
4
Updated Nov 10, 2026
KVDbClient
Public
generic key-value database client
seung-lab/KVDbClient's past year of commit activity
Python
0
MIT
1
0
1
Updated Nov 10, 2026
shard-computer
Public
Perform accelerated shard hash computation on numpy arrays.
seung-lab/shard-computer's past year of commit activity
C++
4
LGPL-2.1
0
0
0
Updated Nov 7, 2026
crackle
Public
3D dense segmentation compression codec based on crack codes.
seung-lab/crackle's past year of commit activity
C++
18
BSD-3-Clause
1
11
2
Updated Nov 6, 2026
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