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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 467 51

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 270 42

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 224 30

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 176 56

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    Python 123 33

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 95 32

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  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

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    seung-lab/cloud-volume's past year of commit activity
    Python 176 BSD-3-Clause 56 86 7 Updated Nov 12, 2026
  • tinybrain Public

    Image pyramid generation for grayscale and segmentation image resize.

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    seung-lab/tinybrain's past year of commit activity
    Python 12 GPL-3.0 0 5 0 Updated Nov 12, 2026
  • ng-extend Public

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    seung-lab/ng-extend's past year of commit activity
    JavaScript 6 8 4 29 Updated Nov 12, 2026
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

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    seung-lab/cloud-files's past year of commit activity
    Python 45 BSD-3-Clause 11 16 1 Updated Nov 11, 2026
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

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    seung-lab/igneous's past year of commit activity
    Python 69 GPL-3.0 25 30 3 Updated Nov 11, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

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    seung-lab/neuroglancer's past year of commit activity
    TypeScript 25 Apache-2.0 427 91 41 Updated Nov 11, 2026
  • CAVEpipelines Public

    Instructions for creating chunkedgraph, initial meshing, l2cache etc

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    seung-lab/CAVEpipelines's past year of commit activity
    Python 7 MPL-2.0 6 0 4 Updated Nov 10, 2026
  • KVDbClient Public

    generic key-value database client

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    seung-lab/KVDbClient's past year of commit activity
    Python 0 MIT 1 0 1 Updated Nov 10, 2026
  • shard-computer Public

    Perform accelerated shard hash computation on numpy arrays.

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    seung-lab/shard-computer's past year of commit activity
    C++ 4 LGPL-2.1 0 0 0 Updated Nov 7, 2026
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

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    seung-lab/crackle's past year of commit activity
    C++ 18 BSD-3-Clause 1 11 2 Updated Nov 6, 2026
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