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  1. MMseqs2 MMseqs2 Public

    MMseqs2: ultra fast and sensitive search and clustering suite

    C 2.2k 316

  2. hh-suite hh-suite Public

    Remote protein homology detection suite.

    C 633 152

  3. WIsH WIsH Public

    Predict prokaryotic host for phage metagenomic sequences

    C++ 57 9

  4. BaMMmotif2 BaMMmotif2 Public

    Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

    C++ 17 5

  5. spacedust spacedust Public

    Discovery of conserved gene clusters in multiple genomes

    C 137 7

  6. MMseqs2-App MMseqs2-App Public

    MMseqs2 app to run on your workstation or servers

    Vue 126 33

Repositories

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Showing 10 of 59 repositories
  • MMseqs2-App Public

    MMseqs2 app to run on your workstation or servers

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    soedinglab/MMseqs2-App's past year of commit activity
    Vue 126 GPL-3.0 33 17 11 Updated Nov 12, 2026
  • MMseqs2 Public

    MMseqs2: ultra fast and sensitive search and clustering suite

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    soedinglab/MMseqs2's past year of commit activity
    C 2,168 MIT 316 228 (2 issues need help) 30 Updated Nov 11, 2026
  • phylo_grad Public

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    soedinglab/phylo_grad's past year of commit activity
    Rust 5 Apache-2.0 0 0 0 Updated Nov 6, 2026
  • MMseqs2-Regression Public

    MMseqs2 Regression Testing

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    soedinglab/MMseqs2-Regression's past year of commit activity
    Shell 2 GPL-3.0 7 0 3 Updated Nov 2, 2026
  • spacedust Public

    Discovery of conserved gene clusters in multiple genomes

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    soedinglab/spacedust's past year of commit activity
    C 137 GPL-3.0 7 18 0 Updated Oct 22, 2026
  • phylo_score Public

    RNA co-evolution detection

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    soedinglab/phylo_score's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 15, 2026
  • hh-suite Public

    Remote protein homology detection suite.

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    soedinglab/hh-suite's past year of commit activity
    C 633 GPL-3.0 152 169 (1 issue needs help) 6 Updated Oct 7, 2026
  • metaeuk Public

    MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

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    soedinglab/metaeuk's past year of commit activity
    C 214 GPL-3.0 26 30 0 Updated Sep 22, 2026
  • metaeuk-regression Public

    Regression test suite for MetaEuk

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    soedinglab/metaeuk-regression's past year of commit activity
    Perl 0 GPL-3.0 1 0 0 Updated Sep 8, 2026
  • MAGmax Public

    From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax

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    soedinglab/MAGmax's past year of commit activity
    Rust 39 GPL-3.0 5 1 0 Updated Aug 28, 2026
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