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A robust, extensible metagenomics pipeline
Python
177
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Template for Sunbeam extensions.
Python
3
3
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Showing 10 of 35 repositories
sunbeam-labs/sbx_genomad's past year of commit activity
Python
0
0
0
2
Updated Nov 9, 2026
sunbeam
Public
A robust, extensible metagenomics pipeline
sunbeam-labs/sunbeam's past year of commit activity
sbx_shotgun_unifrac
Public
Sunbeam extension for assigning metagenomic reads to a full bacterial phylogeny
sunbeam-labs/sbx_shotgun_unifrac's past year of commit activity
Python
0
0
2
2
Updated Nov 9, 2026
sbx_template
Public template
Template for Sunbeam extensions.
sunbeam-labs/sbx_template's past year of commit activity
Python
3
3
0
4
Updated Nov 9, 2026
sbx_baqlava
Public
Runs BAQLaVa on decontaminated reads.
sunbeam-labs/sbx_baqlava's past year of commit activity
Python
0
0
0
5
Updated Nov 9, 2026
sbx_coassembly
Public
Sunbeam extension to co-assemble metagenomic reads using Megahit
sunbeam-labs/sbx_coassembly's past year of commit activity
Python
0
2
1
1
Updated Nov 9, 2026
sbx_sga
Public
A Sunbeam extension for Single Genome Assembly
sunbeam-labs/sbx_sga's past year of commit activity
Python
0
3
3
2
Updated Nov 9, 2026
sbx_kraken
Public
Extension for running kraken2 and kraken2-biom
sunbeam-labs/sbx_kraken's past year of commit activity
Python
0
3
1
5
Updated Nov 9, 2026
sbx_mapping
Public
Extension to map reads against a set of reference genomes
sunbeam-labs/sbx_mapping's past year of commit activity
Python
0
1
0
1
Updated Nov 9, 2026
sbx_assembly
Public
Sunbeam extension for assembly (megahit) and annotation (prodigal)
sunbeam-labs/sbx_assembly's past year of commit activity
Python
0
1
0
1
Updated Nov 9, 2026
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