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1. vembrane/vembrane vembrane/vembrane Public

   vembrane filters, sorts, and transforms VCF records using python expressions

   Python 71 5

2. snakemake-workflows/cyrcular-calling snakemake-workflows/cyrcular-calling Public

   A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.

   Python 4 2

3. varfish-org/mehari varfish-org/mehari Public

   VEP-like tool for sequence ontology and HGVS annotation of VCF files

   Rust 33 3

4. snakemake/snakemake snakemake/snakemake Public

   This is the development home of the workflow management system Snakemake. For general information, see

   Python 2.9k 680

5. rust-bio/rust-bio rust-bio/rust-bio Public

   This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

   Rust 1.8k 225