As part of the RSE group at Princeton, I specialize in refactoring legacy codebases for human population genetics analysis.

I like to

• Accelerate, improve efficiency and refactor code
  • Reimplement algorithms to improve memory usage, like in IBDmix
  • Replace slow, non-pythonic code with compiled libraries, like in introgression
• Use snakemake for reproducible workflows
  • Large genomics analyses
  • Reproduce published results with codeocean
  • Answer questions on stackoverflow
• Develop useful tools
  • Better slurm efficiency reporting with reportseff
  • Linting non-inclusive language with blocklint
• Design and teach workshops
  • snakemake
  • advanced command line tools
• Improve research code through repo reviews