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README.md

Welcome to the WikiPathways Github Organization 👋

👩‍💻 Core Repositories

WikiPathways website - Frontend for pathway database
WikiPathways database - GPML and metadata for approved pathways
WikiPathways assets - JSON, PNG and SVG for approved pathways
WikiPathways homology - Homology-converted GPMLs by organism
Development projects - for developer project planning

🙋‍♀️ Help and Disscussion forums

Help - Public help forum
FAQ - Frequently Asked Questions
Pathway Curation Tasks - Prioritized pathway curation tasks; for beginners, advanced and domain-specific authors
Dev chat - Developer discussions

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wikipathways-database wikipathways-database Public

WikiPathways Database

Shell 19 26
pvjs pvjs Public

JavaScript-based pathway viewer and editor

TypeScript 38 19
rWikiPathways rWikiPathways Public

R package for WikiPathways API

HTML 20 7
pywikipathways pywikipathways Public

Python Client Package for WikiPathways

Python 28 7

Repositories

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All Public Sources Forks Archived Mirrors Templates

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All Dockerfile Groovy Hack HTML Java JavaScript Jupyter Notebook Makefile Nix Perl PHP Python R Shell TeX TypeScript Web Ontology Language

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Showing 10 of 167 repositories

Snorql-UI Public Forked from ammar257ammar/Snorql-UI

wikipathways/Snorql-UI's past year of commit activity

JavaScript 2 GPL-3.0 8 5 0 Updated Nov 12, 2026
curation-portal Public
Submission & curation front door for GitHub-based WikiPathways (WPID allocation, check-out locks, PR-preview, curation dashboard)

wikipathways/curation-portal's past year of commit activity

Python 0 Apache-2.0 0 0 1 Updated Nov 11, 2026
SPARQLQueries Public
Queries for the WikiPathways SPARQL endpoint.

wikipathways/SPARQLQueries's past year of commit activity

Python 3 GPL-3.0 3 7 0 Updated Nov 11, 2026
WikiPathwaysLoader Public
Files and guideline to update the WikiPathways SPARQL endpoint

wikipathways/WikiPathwaysLoader's past year of commit activity

Python 0 GPL-3.0 2 0 0 Updated Nov 11, 2026
wikipathways-data-release Public
Monthly data release

wikipathways/wikipathways-data-release's past year of commit activity

HTML 1 CC0-1.0 1 1 1 Updated Nov 10, 2026
wikipathways-collection Public

wikipathways/wikipathways-collection's past year of commit activity

Java 0 1 1 0 Updated Nov 9, 2026
wikipathways.github.io Public
GitHub pages for GPML-Repo

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wikipathways/wikipathways.github.io's past year of commit activity

HTML 12 27 17 (1 issue needs help) 1 Updated Nov 9, 2026
wikipathways-database Public
WikiPathways Database

wikipathways/wikipathways-database's past year of commit activity

Shell 19 CC0-1.0 26 16 (1 issue needs help) 0 Updated Nov 9, 2026
wikipathways-assets Public
Accessory files generated downstream of approved GPMLs

wikipathways/wikipathways-assets's past year of commit activity

0 CC0-1.0 1 0 0 Updated Nov 9, 2026
sandbox-wp.gh.io Public
Sandbox mirror of wikipathways.github.io

wikipathways/sandbox-wp.gh.io's past year of commit activity

HTML 0 1 0 0 Updated Nov 1, 2026

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wikipathways bioinformatics pathway-enrichment-analysis sparql pathway-analysis

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