Browse free open source Java Information Analysis Software and projects below. Use the toggles on the left to filter open source Java Information Analysis Software by OS, license, language, programming language, and project status.
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Technical analysis library with indicators like ADX, MACD, RSI, Stochastic and TRIX, plus candlestick pattern recognition. Docs: https://ta-lib.org
Available natively in C/C++, Java, Rust and C# with wrappers for python, R and many other ecosystems.
MOVED TO GITHUB: https://github.com/TA-Lib/ta-lib . No further support is provided on SourceForge.
Release 0.4.0 is very outdated, please check github for the most recent release.
A set of tools for working with high-throughput sequencing data
A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then direct you to where your data may have problems and allow you to take necessary steps to correct it before doing any further analysis.
FastQC is not tied to any specific type of sequencing technique, so it can be used to look at libraries of various experiment types (Genomic Sequencing, ChIP-Seq, RNA-Seq, BS-Seq etc etc).
OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.
Transform your applications and workflows into powerful agentic systems at global scale.
Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
Ta4j is an open-source Java library for technical analysis. It provides the basic components for the creation, evaluation, and execution of trading strategies. Ta4j is available on Maven Central. You can also download example code from the maven central repository. The wiki is the best place to start learning about ta4j. For more detailed questions, please use the issues tracker. We can calculate indicators over this bar series, in order to forecast the direction of prices through the study of past market data. Then we have to build our trading strategy. It is made of two trading rules, one for entry, the other for exit. Ta4j comes with a set of basic trading rules/strategies which can be combined using boolean operators. Trading strategies can be easily compared according to a set of analysis criteria. Ta4j can also be used for live trading with more complicated strategies.
An easy to use Java program that allows you to digitize data points off of scanned plots, scaled drawings, or orthographic photographs. Includes an automatic digitization feature that can automatically digitize many types of functional data.
FormScanner is an OMR (Optical Mark Recognition) software that automatically marks multiple-choice papers.
FormScanner not bind you to use a default template of the form, but gives you the ability to use a custom template created from a simple scan of a blank form.
The modules can be scanned as images with a simple scanner and processed with FormScanner software.
All the collected information can be easily exported to a spreadsheet.
Java Modelling Tools is a suite of scientific tools for performance analysis and modelling using queueing theory and colored stochastic Petri nets. Models are solved either with analytical, asymptotic or simulation methods; workload characterization tools are also included in the suite.
See the project website for more details: http://jmt.sf.net
ProM is the comprehensive, extensible framework for process mining. Process Mining deals with the a-posteriori analysis of (business) processes using enactment logs.
Elasticsearch is a distributed, RESTful search and analytics engine that lets you store, search and analyze with ease at scale. It lets you perform and combine many types of searches; it scales seamlessly, and offers answers incredibly fast with search results you can rank based on a variety of factors.
Elasticsearch can be used for a wide variety of use cases, from maps and metrics to site search and workplace search, and with all data types.
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented.
Project files contain:
- simple code to hold/read/write data and perform sample processing.
- BioC-formatted corpora
- BioC tools that work with BioC corpora
BioC goals
- simplicity
- interoperability
- broad use
- reuse
There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining.
An open source data visualization analysis tool available to everyone. DataEase is an open-source data visualization analysis tool that helps users quickly analyze data and gain insight into business trends, so as to achieve business improvement and optimization. DataEase supports rich data source connections, can quickly create charts by dragging and dropping, and can easily share with others. Supports rich chart types (Apache ECharts / AntV), supports drag-and-drop method to quickly create dashboards. Support direct connection mode, local mode (based on Apache Doris / Kettle implementation). Support various data sources such as data warehouse/data lake, OLAP database, OLTP database, Excel data file, API, etc. Open source and open: zero threshold, quick access and installation online; quick access to user feedback, new versions released monthly. pport multiple data sharing methods to ensure data security.
TXM is a free and open-source cross-platform Unicode & XML based text analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in.
DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en
TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org).
Read the scientific background at the Textométrie project web site http://textometrie.ens-lyon.fr/?lang=en.
Read a full description at the TEI Tools wiki http://wiki.tei-c.org/index.php/TXM.
The Wikipedia Miner toolkit provides simplified access to Wikipedia. This open encyclopedia represents a vast, constantly evolving multilingual database of concepts and semantic relations; a promising resource for nlp and related research.
JGAP is a Genetic Algorithms and Genetic Programming package written in Java. It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included.
Legal notice/Impressum:
Klaus Meffert
An der Struth 25
D-65510 Idstein
sourceforge <at> klausmeffert.de
Parsing Korean words by morpheme and part-of-speech
RHINO parses Korean words by morpheme and part-of-speech. Its dictionaries are based on Korean Modern Tagged Corpus(12 million phrases scale) which was made by Korean government. So it analyses many cases of stems and endings. And the newly developed Dynamic Dictionary Technology can make words to react with their context. That is, a programmed database. For more information see the files in the help folder.
Converts Google Earth KML file to a CSV file, and vice versa. This enables you to plot all custom POIs with Google Earth first before transferring them into your Garmin GPS using the POI Loader.
Assists users to analyse and select players in Australian Football League (AFL) based football fantasy competitions. Displayed in a Java Swing GUI, users can sort and filter players based on many statistical categories.
GridLAB-D is a new power system simulation tool that provides valuable information to users who design and operate electric power transmission and distribution systems, and to utilities that wish to take advantage of the latest smart grid technology. It incorporates advanced modeling techniques with high-performance algorithms to deliver the latest in end-use load modeling technology integrated with three-phase unbalanced power flow, and retail market systems. Historically, the inability to effectively model and evaluate smart grid technologies has been a barrier to adoption; GridLAB-D is designed to address this problem.
User documentation can be found at: http://gridlab-d.shoutwiki.com/wiki/Quick_links
The source code is available from GitHub. See https://github.com/gridlab-d/gridlab-d.
Issue tracking is handled by GitHub. See https://github.com/gridlab-d/gridlab-d/issues.
Wordcorr automates the tedious and risky process of tabulating and managing the sound correspondences used in working out the historical development of natural languages. Initial support was from NSF.
open-source, flexible Business Process Management (BPM) in Java
jBPM is a business process management system. The light-weight, embeddable engine can execute native BPMN2. jBPM offers eclipse-based and web-based tooling for developers and business users to create, monitor and manage your processes.
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. Since version 4, we provide functionalities for management of genomes and transcriptomes, including genome alignment and annotation of transposable elements. A complete list of functionalities is available in our wiki (https://sourceforge.net/p/ngsep/wiki/Home/).
BEFORE DOWNLOADING: The green button directs to the jar for command line usage. See the wiki for the GUI and other options
Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
JMulTi is an interactive software designed for univariate and multivariate time series analysis. It has a Java graphical user interface that uses an external engine for statistical computations. It uses the framework JStatCom.
JUNG provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network.
New version now available on GitHub: https://github.com/jrtom/jung/releases/tag/jung-2.1
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