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GeezerVison is showing www.rcsb.org — RCSB PDB - 2DM3: Solution structure of the second ig domain of human palladin

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 Data API 

 2DM3 | pdb_00002dm3

Solution structure of the second ig domain of human palladin

  • PDB DOI: https://doi.org/10.2210/pdb2DM3/pdb
  • Classification: PROTEIN BINDING
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2006-04-20 Released: 2007-04-24 
  • Deposition Author(s): Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function, structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2DM3

This is version 1.4 of the entry. See complete history. 

Literature

  • Download Mendeley

Solution structure of the second ig domain of human palladin

Nagashima, T., Hayashi, F., Yokoyama, S.

To be published.
NMR Ensemble

 Explore in 3D: Structure | Sequence Annotations | Validation Report

Biological Assembly 1  

 Explore in 3D: Structure | Sequence Annotations | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Find Similar Assemblies

Biological assembly 1 assigned by authors.

Macromolecule Content 

  • Total Structure Weight: 11.64 kDa 
  • Atom Count: 813 
  • Modeled Residue Count: 110 
  • Deposited Residue Count: 110 
  • Unique protein chains: 1

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
KIAA0992 protein
A
110Homo sapiensMutation(s): 0 
Gene Names: KIAA0992
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WX93 (Homo sapiens)
Explore Q8WX93 
Go to UniProtKB:  Q8WX93
PHAROS:  Q8WX93
GTEx:  ENSG00000129116 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8WX93
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function, structures with the lowest energy 

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

Deposition Data

  • Released Date: 2007-04-24 
    • Deposition Author(s): Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  (Full details and data files)

  • Version 1.0: 2007-04-24
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-09
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-29
    Changes: Data collection
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