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GeezerVison is showing www.rcsb.org — RCSB PDB - 2LE4: Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2

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 Data API 

 2LE4 | pdb_00002le4

Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2

  • PDB DOI: https://doi.org/10.2210/pdb2LE4/pdb
  • BMRB: 17691
  • Classification: TRANSCRIPTION
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2011-06-06 Released: 2011-07-27 
  • Deposition Author(s): Sahu, S.C., Markley, J.L., Tonelli, M., Bahrami, A., Eghbalnia, H.R., Center for Eukaryotic Structural Genomics (CESG)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

Validation slider image for 2LE4

This is version 1.2 of the entry. See complete history. 

Literature

  • Download Mendeley

Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2

Sahu, S., Markley, J., Tonelli, M., Bahrami, A., Eghbalnia, H.

To be published.
NMR Ensemble

 Explore in 3D: Structure | Sequence Annotations | Validation Report

Biological Assembly 1  

 Explore in 3D: Structure | Sequence Annotations | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Find Similar Assemblies

Biological assembly 1 assigned by authors.

Macromolecule Content 

  • Total Structure Weight: 9.92 kDa 
  • Atom Count: 694 
  • Modeled Residue Count: 81 
  • Deposited Residue Count: 81 
  • Unique protein chains: 1

Macromolecules

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|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription factor SOX-2
A
81Homo sapiensMutation(s): 0 
Gene Names: SOX2
UniProt & NIH Common Fund Data Resources
Find proteins for P48431 (Homo sapiens)
Explore P48431 
Go to UniProtKB:  P48431
GTEx:  ENSG00000181449 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP48431
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

Deposition Data

  • Released Date: 2011-07-27 
    • Deposition Author(s): Sahu, S.C., Markley, J.L., Tonelli, M., Bahrami, A., Eghbalnia, H.R., Center for Eukaryotic Structural Genomics (CESG)

Revision History  (Full details and data files)

  • Version 1.0: 2011-07-27
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references, Other
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references
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