GeezerVison is showing www.rcsb.org — RCSB PDB - 3KLS: Structure of complement C5 in complex with SSL7 3KLS | pdb_00003klsStructure of complement C5 in complex with SSL7 - Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Staphylococcus aureus subsp. aureus MRSA252
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2009-11-09 Released: 2009-11-24
- Deposition Author(s): Laursen, N.S., Gordon, N., Hermans, S., Lorenz, N., Jackson, N., Wines, B., Spillner, E., Christensen, J.B., Jensen, M., Fredslund, F., Bjerre, M., Sottrup-Jensen, L., Fraser, J.D., Andersen, G.R.
Experimental Data Snapshot - Method: X-RAY DIFFRACTION
- Resolution: 3.60 Å
- R-Value Free:
0.263 (Depositor), 0.258 (DCC) - R-Value Work:
0.198 (Depositor), 0.193 (DCC) - R-Value Observed:
0.201 (Depositor)
Starting Model: experimental View more details This is version 2.3 of the entry. See complete history. Structural basis for inhibition of complement C5 by the SSL7 protein from Staphylococcus aureusLaursen, N.S., Gordon, N., Hermans, S., Lorenz, N., Jackson, N., Wines, B., Spillner, E., Christensen, J.B., Jensen, M., Fredslund, F., Bjerre, M., Sottrup-Jensen, L., Fraser, J.D., Andersen, G.R.(2010) Proc Natl Acad Sci U S A 107: 3681-3686 - PubMed: 20133685 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1073/pnas.0910565107
- Primary Citation Related Structures:
3KLS, 3KM9
- PubMed Abstract:
Staphylococcus aureus secretes the SSL7 protein as part of its immune evasion strategy. The protein binds both complement C5 and IgA, yet it is unclear whether SSL7 cross-links these two proteins and, if so, what purpose this serves the pathogen. We have isolated a stable IgA-SSL7-C5 complex, and our crystal structure of the C5-SSL7 complex confirms that binding to C5 occurs exclusively through the C-terminal beta-grasp domain of SSL7 leaving the OB domain free to interact with IgA. SSL7 interacts with C5 >70 A from the C5a cleavage site without inducing significant conformational changes in C5, and efficient inhibition of convertase cleavage of C5 is shown to be IgA dependent. Inhibition of C5a production and bacteriolysis are all shown to require C5 and IgA binding while inhibition of hemolysis is achieved by the C5 binding SSL7 beta-grasp domain alone. These results provide a conceptual and structural basis for the development of a highly specific complement inhibitor preventing only the formation of the lytic membrane attack complex without affecting the important signaling functions of C5a. Organizational Affiliation: - Department of Molecular Biology, University of Aarhus, DK-8000 Aarhus, Denmark.
Macromolecule Content - Total Structure Weight: 431.38 kDa
- Atom Count: 27,683
- Modeled Residue Count: 3,482
- Deposited Residue Count: 3,814
- Unique protein chains: 2
Entity ID: 3 |
|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | D Interactions |
|---|
| 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E [auth C], F [auth D] | 2 | | N-Glycosylation | | Glycosylation Resources | |
Small Molecules| Ligands 2 Unique |
|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions |
|---|
NAG
Query on NAG
Download:Ideal Coordinates CCD File
| L [auth A], Q [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | | CD
Query on CD
Download:Ideal Coordinates CCD File
- SDF format, chain G [auth A]
- SDF format, chain H [auth A]
- SDF format, chain I [auth A]
- SDF format, chain J [auth A]
- SDF format, chain K [auth A]
- SDF format, chain M [auth B]
- SDF format, chain N [auth B]
- SDF format, chain O [auth B]
- SDF format, chain P [auth B]
- MOL2 format, chain G [auth A]
- MOL2 format, chain H [auth A]
- MOL2 format, chain I [auth A]
- MOL2 format, chain J [auth A]
- MOL2 format, chain K [auth A]
- MOL2 format, chain M [auth B]
- MOL2 format, chain N [auth B]
- MOL2 format, chain O [auth B]
- MOL2 format, chain P [auth B]
- mmCIF format, chain G [auth A]
- mmCIF format, chain H [auth A]
- mmCIF format, chain I [auth A]
- mmCIF format, chain J [auth A]
- mmCIF format, chain K [auth A]
- mmCIF format, chain M [auth B]
- mmCIF format, chain N [auth B]
- mmCIF format, chain O [auth B]
- mmCIF format, chain P [auth B]
| G [auth A] H [auth A] I [auth A] J [auth A] K [auth A]
G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], M [auth B], N [auth B], O [auth B], P [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | |
Experimental Data & ValidationExperimental Data- Method: X-RAY DIFFRACTION
- Resolution: 3.60 Å
- R-Value Free: 0.263 (Depositor), 0.258 (DCC)
- R-Value Work: 0.198 (Depositor), 0.193 (DCC)
- R-Value Observed: 0.201 (Depositor)
Unit Cell: | Length ( Å ) | Angle ( ˚ ) |
|---|
| a = 143.875 | α = 90 | | b = 143.875 | β = 90 | | c = 241.24 | γ = 120 |
Software Package:| Software Name | Purpose |
|---|
| MAR345dtb | data collection | | PHASER | phasing | | PHENIX | refinement | | XDS | data reduction | | XSCALE | data scaling |
Entry History Deposition Data- Released Date: 2009-11-24
Deposition Author(s): Laursen, N.S., Gordon, N., Hermans, S., Lorenz, N., Jackson, N., Wines, B., Spillner, E., Christensen, J.B., Jensen, M., Fredslund, F., Bjerre, M., Sottrup-Jensen, L., Fraser, J.D., Andersen, G.R.
- Version 1.0: 2009-11-24
Type: Initial release
- Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2018-05-30
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation Reason: Carbohydrate remediation Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2021-11-10
Changes: Database references, Structure summary - Version 2.2: 2023-11-01
Changes: Data collection, Refinement description - Version 2.3: 2024-11-06
Changes: Structure summary
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