GV

GeezerVison

The World Wide Web, restored to 800 pixels of glory.

Home|About|Gaming cabinet|Archives|How it works|Starter sites

On this site

  • Sign in
  • Becksteinlab
  • ActionsCI/CD and automation
  • CodespacesCloud development environments
  • All Features
  • Documentation
  • Training
  • Certifications
  • Build with Copilot
  • Customize Copilot
  • Integrations
  • Trending repos
  • GitHub Sponsors
  • Developer articles

This view

  • Original page
  • New address

GeezerVison is showing github.com — Becksteinlab

README.md

Beckstein Lab at Arizona State University 👋

The Beckstein Lab is part of the Center for Biological Physics and the Department of Physics at Arizona State University. It is headed by Oliver Beckstein.

The lab uses computational approaches such as molecular dynamics simulations in order to understand the function of biomolecules, in particular membrane proteins, at the molecular level.

Our work belongs to the area of computational biophysics. We aim to quantitatively predict the function and activity of proteins from the knowledge of their structures alone and so to better understand biological phenomena at the molecular level, in particular transmembrane transport processess catalyzed by membrane proteins such as secondary active transporters and ion channels. This works contributes to the fields of structural biology, physiology, nanobiotechnology as well as ultimately to the development of new drugs.

Pinned Loading

  1. GromacsWrapper GromacsWrapper Public

    GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).

    Python 193 56

  2. kda kda Public

    Python package used for the analysis of biochemical kinetic diagrams.

    Python 6 1

  3. MDPOW MDPOW Public

    Calculation of water/solvent partition coefficients with Gromacs.

    Python 30 10

  4. zarrtraj zarrtraj Public

    zarrtraj MDAKit for @MDAnalysis

    Jupyter Notebook 9 2

  5. imdclient imdclient Public

    Streaming analysis from running MD simulations.

    Python 13 3

  6. basicrta basicrta Public

    Bayesian nonparametric inference of ligand binding kinetics from molecular dynamics simulations.

    Python 2 2

Repositories

Loading
Type
Language
Sort
Showing 10 of 71 repositories
  • streaming-md-docker Public

    Docker images with MD packages that support streaming with IMD v3.

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/streaming-md-docker's past year of commit activity
    Dockerfile 1 MIT 0 7 1 Updated Nov 12, 2026
  • Protein_Area Public

    Calculation of cross sectional area profiles from MD simulations of membrane proteins.

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/Protein_Area's past year of commit activity
    Python 2 GPL-2.0 1 4 2 Updated Nov 9, 2026
  • imdclient Public

    Streaming analysis from running MD simulations.

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/imdclient's past year of commit activity
    Python 13 MIT 3 27 (1 issue needs help) 2 Updated Nov 5, 2026
  • zarrtraj Public

    zarrtraj MDAKit for @MDAnalysis

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/zarrtraj's past year of commit activity
    Jupyter Notebook 9 MIT 2 10 1 Updated Nov 5, 2026
  • GromacsWrapper Public

    GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/GromacsWrapper's past year of commit activity
    Python 193 GPL-3.0 56 14 0 Updated Nov 5, 2026
  • Prestin_Analysis Public

    Analysis scripts for prestin project

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/Prestin_Analysis's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 11, 2026
  • ConfoState Public

    Categorizing functional states of transporters

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/ConfoState's past year of commit activity
    Python 0 MIT 0 4 0 Updated Aug 10, 2026
  • TBC1D5-Rab7-NHE6-proton-diffusion-model Public

    Computational models and analyses for studying proton diffusion in the TBC1D5-Rab7-NHE6 protein complex

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/TBC1D5-Rab7-NHE6-proton-diffusion-model's past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Jul 28, 2026
  • hollow Public

    Fork of Bosco Ho's and Franz Gruswitz's HOLLOW 1.1 (see http://hollow.sourceforge.net/).

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/hollow's past year of commit activity
    Python 6 2 4 0 Updated Jul 27, 2026
  • propkatraj Public

    pKa estimates for proteins using an ensemble approach

    Uh oh!

    There was an error while loading. Please reload this page.

    Becksteinlab/propkatraj's past year of commit activity
    Python 31 GPL-2.0 8 7 1 Updated Jul 24, 2026
View all repositories

People

@orbeckst @ianmkenney

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

You are visitor 01402503 — GeezerVison does not store the pages you look up.
Best viewed with Netscape Navigator 4.7 or Internet Explorer 6 at 800×600. No cookies required.