Find regulation gene with deep learning model
Demo test base on dataset:
EncodeDCC: https://genome.ucsc.edu/ENCODE/downloads.html
Roadmap: https://personal.broadinstitute.org/anshul/projects/roadmap/peaks/consolidated/narrowPeak/
Files in create_raw_label directory used to generate peak name and corresponding segment id list
parse_chr_peak.sh chr[1-22|X|Y] start_peak end_peak
chr[1-22|X|Y] : the name of chromesome to analysis
start_peak : from which peak in the gz-file-list.txt to start extract
end_peak : the end index of peak
peak_name segment_1 segment_2 ... ...
peak_name : peak data file name (with gz extention)
segment_* : divide the gene sequence into segments of 200 bps,
segment_* is the index of a peak on the chromesome